RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA605033", tax_clade = "ac1 cluster" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 3 ✖

tax_clade 1

  • ac1 cluster · 3 ✖

bioproject 1

  • PRJNA605033 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27124492 27124492 PRJNA605033_P_NODE_101322_length_222_cov_1.930481_g99753_i0 PRJNA605033 101322 222 1.930481 4.28566782 Bacteria 2 Bacteria Bacteria 49.3 1.26e-4   NR KRO30622.1 1655572 g99753 i0 91.7 0.648648648648649 24 2 32.4 0 149 220 226 249 KRO30622.1 MAG: multidrug DMT transporter permease [Actinobacteria bacterium BACL2 MAG-121001-bin67] diamond 144 49.3 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-121001-bin67
29872161 29872161 PRJNA605033_P_NODE_241151_length_152_cov_1.299145_g239582_i0 PRJNA605033 241151 152 1.299145 1.9747004 Clavibacter 1573 Bacteria Bacteria 91.3 8.19e-20   NR KRO51936.1 1655570 g239582 i0 96 3.94736842105263 50 2 98.7 0 2 151 76 125 KRO51936.1 MAG: DNA primase, partial [Actinobacteria bacterium BACL2 MAG-120820-bin50] diamond 600 92 0.992391304347826 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120820-bin50
29872164 29872164 PRJNA605033_P_NODE_79471_length_222_cov_2.529412_g77902_i0 PRJNA605033 79471 222 2.529412 5.61529464 Bacteria 2 Bacteria Bacteria 54.3 2.29e-6   NR KRO43130.1 1655569 g77902 i0 100 1.94594594594595 24 0 32.4 0 150 221 403 426 KRO43130.1 MAG: threonine--tRNA ligase, partial [Actinobacteria bacterium BACL2 MAG-120813-bin23] diamond 432 54.3 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120813-bin23

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;