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contig_metadata

6 rows where bioproject = "PRJNA605033", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA605033 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
582612 582612 PRJNA605033_P_NODE_28781_length_282_cov_1.963563_g27215_i0 PRJNA605033 28781 282 1.963563 5.53724766 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 261 3.97e-65   NTclustered gi|325194231|emb|FR825088.1| 890382 g27215 i0 100 1.34042553191489 141 0 84 0 142 282 871 1011 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 378 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
1857979 1857979 PRJNA605033_P_NODE_200182_length_166_cov_0.992366_g198613_i0 PRJNA605033 200182 166 0.992366 1.64732756 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 60.2 8.31e-5   NTclustered gi|2795026526|ref|XM_067934115.1| 4785 g198613 i0 100 0.385542168674699 32 0 19 0 105 136 145 176 Phytophthora cinnamomi putative soluble pyridine nucleotide transhydrogenase (IUM83_09663), partial mRNA blastn 64 60.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13336601 13336601 PRJNA605033_P_NODE_235011_length_153_cov_5.533898_g233442_i0 PRJNA605033 235011 153 5.533898 8.46686394 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 134 4.3500000000000006e-27   NTclustered gi|325195233|emb|FR826028.1| 890382 g233442 i0 94.318 0.803921568627451 88 3 56 2 68 153 185 272 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 123 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
19707865 19707865 PRJNA605033_P_NODE_119196_length_222_cov_1.582888_g117627_i0 PRJNA605033 119196 222 1.582888 3.51401136 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 58.4 4.23e-4   NTclustered gi|813141428|ref|XM_012343565.1| 695850 g117627 i0 89.362 0.211711711711712 47 3 21 2 30 75 832 787 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 47 58.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
20271914 20271914 PRJNA605033_P_NODE_235256_length_153_cov_3.957627_g233687_i0 PRJNA605033 235256 153 3.957627 6.05516931 root 1 Root_unresolved Root_unresolved 158 2.58e-34   NTclustered gi|166046600|emb|CU367717.1| 100861 g233687 i0 98.876 19.1176470588235 89 0 94 1 66 153 509 597 Aphanomyces euteiches cDNA blastn 2925 158 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28988255 28988255 PRJNA605033_P_NODE_86348_length_222_cov_2.283422_g84779_i0 PRJNA605033 86348 222 2.283422 5.06919684 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00725   NR TMW55191.1 41045 g84779 i0 79.2 2.27027027027027 24 5 32.4 0 149 220 43 66 TMW55191.1 hypothetical protein Poli38472_013953 [Pythium oligandrum] diamond 504 44.7 0.991051454138702 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;