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contig_metadata

14 rows where bioproject = "PRJNA605033", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 14 ✖

tax_clade 1

  • Sar · 14 ✖

bioproject 1

  • PRJNA605033 · 14 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4410488 4410488 PRJNA605033_P_NODE_4824_length_649_cov_6.615635_g3505_i0 PRJNA605033 4824 649 6.615635 42.93547115 Tetrahymena chironomi 3034767 SAR_Eukaryotes SAR_Eukaryotes 1038 0   NTclustered gi|2459327221|gb|OQ626840.1| 3034767 g3505 i0 95.566 69.9553158705701 654 20 100 5 1 649 469 1118 Tetrahymena chironomi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 45401 1038 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena chironomi
5686633 5686633 PRJNA605033_P_NODE_52645_length_236_cov_1.283582_g51077_i0 PRJNA605033 52645 236 1.283582 3.02925352 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 132 2.64e-26   NTclustered gi|220966760|gb|FJ545743.1| 94289 g51077 i0 77.682 12.8898305084746 233 40 95 10 12 236 7351 7123 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 3042 132 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
6248549 6248549 PRJNA605033_P_NODE_14885_length_366_cov_2.054381_g13341_i0 PRJNA605033 14885 366 2.054381 7.51903446 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 351 3.06e-92   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g13341 i0 100 51.8661202185792 190 0 95 0 1 190 2324 2135 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 18983 351 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6961367 6961367 PRJNA605033_P_NODE_7186_length_519_cov_2.419421_g5735_i0 PRJNA605033 7186 519 2.419421 12.55679499 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 798 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g5735 i0 94.423 47.9210019267823 520 27 100 2 1 519 690 172 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 24871 798 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
10073227 10073227 PRJNA605033_P_NODE_11668_length_408_cov_1.705094_g10137_i0 PRJNA605033 11668 408 1.705094 6.95678352 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 324 7.52e-84   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g10137 i0 98.37 50.625 184 3 45 0 225 408 3082 2899 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20655 324 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
11348395 11348395 PRJNA605033_P_NODE_16529_length_349_cov_3.901274_g14979_i0 PRJNA605033 16529 349 3.901274 13.61544626 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 621 1.9999999999999997e-173   NTclustered gi|1621049938|gb|MK801290.1| 41631 g14979 i0 98.854 96.6532951289398 349 3 100 1 1 349 6 353 Colpoda sp. clone wx2 small subunit ribosomal RNA gene, partial sequence blastn 33732 621 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
12062071 12062071 PRJNA605033_P_NODE_3510_length_789_cov_2.931034_g2315_i0 PRJNA605033 3510 789 2.931034 23.12585826 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 1435 0   NTclustered gi|512134943|gb|JX178902.1| 1295638 g2315 i0 99.493 85.0278833967047 789 4 100 0 1 789 1825 1037 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 67087 1435 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
13337149 13337149 PRJNA605033_P_NODE_6131_length_565_cov_5.675472_g4056_i1 PRJNA605033 6131 565 5.675472 32.0664168 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 562 2.08e-155   NTclustered gi|2651357788|gb|PP174303.1| 41631 g4056 i1 84.79 85.8106194690265 572 74 99 9 1 562 2414 1846 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 48483 562 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15885748 15885748 PRJNA605033_P_NODE_43993_length_249_cov_1.308411_g42425_i0 PRJNA605033 43993 249 1.308411 3.25794339 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 427 3.2e-115   NTclustered gi|10782|emb|X54004.1| 5908 g42425 i0 97.59 31.9397590361446 249 6 100 0 1 249 2178 1930 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 7953 427 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
17723678 17723678 PRJNA605033_P_NODE_5414_length_608_cov_5.186736_g4056_i0 PRJNA605033 5414 608 5.186736 31.53535488 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 643 7.809999999999996e-180   NTclustered gi|2651357791|gb|PP174306.1| 41631 g4056 i0 86.184 83.34375 608 69 98 11 9 605 1735 2338 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 50673 643 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
20271281 20271281 PRJNA605033_P_NODE_136256_length_209_cov_1.137931_g134687_i0 PRJNA605033 136256 209 1.137931 2.37827579 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 359 9.64e-95   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g134687 i0 97.608 79.066985645933 209 5 100 0 1 209 2364 2572 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 16525 359 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
21547326 21547326 PRJNA605033_P_NODE_237497_length_153_cov_1.355932_g235928_i0 PRJNA605033 237497 153 1.355932 2.07457596 root 1 Root_unresolved Root_unresolved 283 4.0799999999999995e-72   NTclustered gi|1837628855|gb|MN158348.1| 5909 g235928 i0 100 100.941176470588 153 0 100 0 1 153 5195 5347 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15444 283 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
23534999 23534999 PRJNA605033_P_NODE_241199_length_152_cov_1.256410_g239630_i0 PRJNA605033 241199 152 1.25641 1.9097432 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 281 1.46e-71   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g239630 i0 100 95.7763157894737 152 0 100 0 1 152 1533 1684 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 14558 281 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
24097254 24097254 PRJNA605033_P_NODE_230199_length_155_cov_1.800000_g228630_i0 PRJNA605033 230199 155 1.8 2.79 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 281 1.49e-71   NTclustered gi|2067012198|gb|MZ557838.1| 5980 g228630 i0 100 98.0645161290323 152 0 98 0 4 155 1064 913 Colpoda inflata isolate ZL20210414 small subunit ribosomal RNA gene, partial sequence blastn 15200 281 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;