RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA605033", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA605033 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27819946 27819946 PRJNA605033_P_NODE_219864_length_158_cov_3.235772_g218295_i0 PRJNA605033 219864 158 3.235772 5.11251976 Bacteria 2 Bacteria Bacteria 71.2 1.02e-12   NR OGV93495.1 1798581 g218295 i0 62.7 2.94303797468354 51 19 96.8 0 5 157 275 325 OGV93495.1 MAG: integrase [Lentisphaerae bacterium RIFOXYB12_FULL_65_16] diamond 465 71.6 0.994413407821229 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYB12_FULL_65_16
32514820 32514820 PRJNA605033_P_NODE_115439_length_222_cov_1.695187_g113870_i0 PRJNA605033 115439 222 1.695187 3.76331514 Candidatus Spyradenecus faecavium 2840947 Bacteria Bacteria 57 2.63e-7   NR HIV09768.1 2840947 g113870 i0 88 0.337837837837838 25 3 33.8 0 221 147 643 667 HIV09768.1 exo-alpha-sialidase [Candidatus Spyradenecus faecavium] diamond 75 57 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Candidatus Spyradenecus Candidatus Spyradenecus faecavium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;