RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA605033", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA605033 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1858997 1858997 PRJNA605033_P_NODE_82762_length_222_cov_2.406417_g81193_i0 PRJNA605033 82762 222 2.406417 5.34224574 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 139 1.47e-28   NTclustered gi|1124902734|gb|AY812498.2| 6182 g81193 i0 100 29.7702702702703 75 0 34 0 148 222 42 116 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 6609 139 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
17723197 17723197 PRJNA605033_P_NODE_212994_length_161_cov_1.269841_g211425_i0 PRJNA605033 212994 161 1.269841 2.04444401 Schistosomatidae 31245 Platyhelminthes Platyhelminthes 97.1 6.09e-16   NTclustered gi|29690332|gb|AY157242.1| 100594 g211425 i0 77.987 91.9503105590062 159 31 99 3 2 160 3516 3362 Gigantobilharzia huronensis 28S large subunit ribosomal RNA gene, partial sequence blastn 14804 97.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Gigantobilharzia Gigantobilharzia huronensis
28816677 28816677 PRJNA605033_P_NODE_34288_length_266_cov_1.818182_g32722_i0 PRJNA605033 34288 266 1.818182 4.83636412 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 48.5 1.88e-4   NR AAW25703.1 6182 g32722 i0 49 0.552631578947368 49 25 55.3 0 113 259 43 91 AAW25703.1 SJCHGC03999 protein [Schistosoma japonicum] diamond 147 48.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;