RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA605033", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA605033 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11348691 11348691 PRJNA605033_P_NODE_207989_length_162_cov_8.322835_g206420_i0 PRJNA605033 207989 162 8.322835 13.4829927 Metazoa 33208 Mollusca Mollusca 110 7.89e-20   NTclustered gi|1835524595|ref|XR_004531569.1| 6579 g206420 i0 79.394 102.024691358025 165 26 99 8 3 162 177 16 PREDICTED: Pecten maximus U2 spliceosomal RNA (LOC117322547), ncRNA blastn 16528 110 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
13336111 13336111 PRJNA605033_P_NODE_183831_length_173_cov_1.688406_g182262_i0 PRJNA605033 183831 173 1.688406 2.92094238 Bradybaena similaris 145626 Mollusca Mollusca 63.9 6.71e-6   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g182262 i0 90 299.341040462428 50 3 28 2 36 83 37918039 37917990 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 51786 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24809068 24809068 PRJNA605033_P_NODE_40360_length_254_cov_9.292237_g38792_i0 PRJNA605033 40360 254 9.292237 23.60228198 Aplysia californica 6500 Mollusca Mollusca 52.8 0.023   NTclustered gi|1897936549|ref|XM_005106389.3| 6500 g38792 i0 100 0.110236220472441 28 0 11 0 17 44 3673 3646 PREDICTED: Aplysia californica RRP12-like protein (LOC101856684), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
31894895 31894895 PRJNA605033_P_NODE_196257_length_167_cov_2.446970_g194688_i0 PRJNA605033 196257 167 2.44697 4.0864399 Ostreidae 6563 Mollusca Mollusca 45.4 0.00149   NR XP_011456874.3 29159 g194688 i0 63.6 1.18562874251497 33 12 59.3 0 100 2 381 413 XP_011456874.3 RNA-binding protein RO60 [Magallana gigas] diamond 198 45.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;