RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA605033", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA605033 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29290500 29290500 PRJNA605033_P_NODE_166689_length_182_cov_2.006803_g165120_i0 PRJNA605033 166689 182 2.006803 3.65238146 Chlorobiota bacterium 2268192 Bacteria Bacteria 72.4 3.09e-13   NR GDX65947.1 2268192 g165120 i0 56.7 1.97802197802198 60 25 98.9 1 2 181 94 152 GDX65947.1 hypothetical protein LBMAG36_10140 [Chlorobiota bacterium] diamond 360 72.4 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
30016983 30016983 PRJNA605033_P_NODE_191231_length_169_cov_3.649254_g189662_i0 PRJNA605033 191231 169 3.649254 6.16723926 Chlorobiales bacterium 2723030 Bacteria Bacteria 42.4 0.0184   NR MBC8043488.1 2723030 g189662 i0 94.7 1.93491124260355 19 1 33.7 0 78 134 110 128 MBC8043488.1 hypothetical protein [Chlorobiales bacterium] diamond 327 42.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;