RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA605033", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA605033 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29448158 29448158 PRJNA605033_P_NODE_115490_length_222_cov_1.695187_g113921_i0 PRJNA605033 115490 222 1.695187 3.76331514 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 48.9 1.88e-4   NR MBI4556621.1 2030809 g113921 i0 83.3 0.324324324324324 24 4 32.4 0 150 221 294 317 MBI4556621.1 PAS domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 72 48.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32703586 32703586 PRJNA605033_P_NODE_140340_length_204_cov_1.485207_g138771_i0 PRJNA605033 140340 204 1.485207 3.02982228 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 62 3.52e-9   NR MDZ4858872.1 2030809 g138771 i0 45.8 2.02941176470588 72 31 95.6 3 197 3 139 209 MDZ4858872.1 VIT and VWA domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 414 62 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32735408 32735408 PRJNA605033_P_NODE_47180_length_243_cov_4.788462_g45612_i0 PRJNA605033 47180 243 4.788462 11.63596266 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 49.7 1.28e-4   NR GMU92148.1 2030809 g45612 i0 70.4 0.333333333333333 27 8 33.3 0 241 161 97 123 GMU92148.1 MAG: hypothetical protein AMXMBFR4_12060 [Candidatus Hydrogenedentota bacterium] diamond 81 49.7 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;