RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA605033", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA605033 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4410761 4410761 PRJNA605033_P_NODE_8284_length_481_cov_3.011211_g6798_i0 PRJNA605033 8284 481 3.011211 14.48392491 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 165 5.77e-36   NTclustered gi|2031941502|emb|OD957913.1| 5763 g6798 i0 96.939 0.203742203742204 98 3 20 0 384 481 1 98 Naegleria fowleri Karachi_NF001 strain blastn 98 165 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
8234957 8234957 PRJNA605033_P_NODE_168907_length_181_cov_1.328767_g167338_i0 PRJNA605033 168907 181 1.328767 2.40506827 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 222 1.11e-53   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g167338 i0 88.95 3.93922651933702 181 19 100 1 1 181 2267 2446 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 713 222 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
8235894 8235894 PRJNA605033_P_NODE_37467_length_260_cov_1.364444_g35900_i0 PRJNA605033 37467 260 1.364444 3.5475544 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 331 2.72e-86   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g35900 i0 99.451 71.0692307692308 182 1 70 0 1 182 351 532 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 18478 331 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
12062409 12062409 PRJNA605033_P_NODE_7110_length_521_cov_3.580247_g5660_i0 PRJNA605033 7110 521 3.580247 18.65308687 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 165 6.29e-36   NTclustered gi|2031941502|emb|OD957913.1| 5763 g5660 i0 96.939 0.18809980806142 98 3 19 0 424 521 1 98 Naegleria fowleri Karachi_NF001 strain blastn 98 165 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15885939 15885939 PRJNA605033_P_NODE_61533_length_225_cov_1.473684_g59965_i0 PRJNA605033 61533 225 1.473684 3.315789 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 54.7 0.006   NTclustered gi|2651357799|gb|PP174312.1| 1892890 g59965 i0 92.105 0.168888888888889 38 3 17 0 6 43 3310 3347 Heterolobosea sp. isolate S28D10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 38 54.7 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
19709779 19709779 PRJNA605033_P_NODE_9036_length_461_cov_3.089202_g7532_i0 PRJNA605033 9036 461 3.089202 14.24122122 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 165 5.51e-36   NTclustered gi|2031941502|emb|OD957913.1| 5763 g7532 i0 96.939 0.212581344902386 98 3 21 0 364 461 1 98 Naegleria fowleri Karachi_NF001 strain blastn 98 165 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24096944 24096944 PRJNA605033_P_NODE_178319_length_176_cov_1.248227_g176750_i0 PRJNA605033 178319 176 1.248227 2.19687952 root 1 Root_unresolved Root_unresolved 84.2 5.27e-12   NTclustered gi|2031940644|emb|OD957727.1| 5763 g176750 i0 96.078 2.89772727272727 51 2 29 0 1 51 233 283 Naegleria fowleri Karachi_NF001 strain blastn 510 84.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;