RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA605033", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Methylomirabilota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA605033 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30598626 30598626 PRJNA605033_P_NODE_11613_length_408_cov_3.522788_g10082_i0 PRJNA605033 11613 408 3.522788 14.37297504 Pseudomonadati 3379134 Bacteria Bacteria 147 5.1e-42   NR HEX7787526.1 2072417 g10082 i0 74.4 1.33088235294118 90 23 66.2 0 136 405 1 90 HEX7787526.1 adenylate kinase [Candidatus Methylomirabilota bacterium] diamond 543 147 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
31122348 31122348 PRJNA605033_P_NODE_29375_length_280_cov_1.808163_g27809_i0 PRJNA605033 29375 280 1.808163 5.0628564 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 60.1 4.34e-8   NR HYB61079.1 2072417 g27809 i0 68.2 0.471428571428571 44 14 47.1 0 3 134 49 92 HYB61079.1 APC family permease [Candidatus Methylomirabilota bacterium] diamond 132 60.1 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
31660146 31660146 PRJNA605033_P_NODE_23717_length_302_cov_2.752809_g22156_i0 PRJNA605033 23717 302 2.752809 8.31348318 Candidatus Methylomirabilis sp. 2032687 Bacteria Bacteria 144 2e-39   NR HWS96661.1 2032687 g22156 i0 85.4 9.77483443708609 82 12 81.5 0 1 246 265 346 HWS96661.1 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein [Candidatus Methylomirabilis sp.] diamond 2952 144 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;