RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA605033" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA605033 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
581186 581186 PRJNA605033_P_NODE_118701_length_222_cov_1.604278_g117132_i0 PRJNA605033 118701 222 1.604278 3.56149716 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 134 6.84e-27   NTclustered gi|292559443|ref|NC_013986.1| 5778 g117132 i0 98.667 0.337837837837838 75 1 34 0 1 75 34529 34455 Hartmannella vermiformis mitochondrion, complete genome blastn 75 134 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1144656 1144656 PRJNA605033_P_NODE_102641_length_222_cov_1.909091_g101072_i0 PRJNA605033 102641 222 1.909091 4.23818202 Soliformovum 435422 Evosea other_Eukaryota 82.4 2.51e-11   NTclustered gi|260909293|gb|FJ766479.1| 435423 g101072 i0 97.872 1.02252252252252 47 1 21 0 5 51 71 117 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 227 82.4 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
3132955 3132955 PRJNA605033_P_NODE_193623_length_168_cov_3.218045_g192054_i0 PRJNA605033 193623 168 3.218045 5.4063156 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.11e-80   NTclustered gi|292559443|ref|NC_013986.1| 5778 g192054 i0 100 1 168 0 100 0 1 168 40638 40805 Hartmannella vermiformis mitochondrion, complete genome blastn 168 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4409555 4409555 PRJNA605033_P_NODE_181524_length_174_cov_2.129496_g179955_i0 PRJNA605033 181524 174 2.129496 3.70532304 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 320 3.63e-83   NTclustered gi|300078496|gb|GU001158.1| 5778 g179955 i0 100 88.9770114942529 173 0 99 0 2 174 2416 2244 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15482 320 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12062274 12062274 PRJNA605033_P_NODE_54110_length_234_cov_1.145729_g52542_i0 PRJNA605033 54110 234 1.145729 2.68100586 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 171 5.55e-38   NTclustered gi|511487963|gb|JX898537.1| 1260765 g52542 i0 97.03 5.55982905982906 101 3 43 0 72 172 268 368 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1301 171 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
14611712 14611712 PRJNA605033_P_NODE_36792_length_261_cov_1.915929_g35225_i0 PRJNA605033 36792 261 1.915929 5.00057469 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 316 7.64e-82   NTclustered gi|292559443|ref|NC_013986.1| 5778 g35225 i0 100 0.655172413793103 171 0 66 0 91 261 9040 9210 Hartmannella vermiformis mitochondrion, complete genome blastn 171 316 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22259361 22259361 PRJNA605033_P_NODE_211138_length_161_cov_3.468254_g209569_i0 PRJNA605033 211138 161 3.468254 5.58388894 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 298 1.56e-76   NTclustered gi|292559443|ref|NC_013986.1| 5778 g209569 i0 100 2.54658385093168 161 0 100 0 1 161 50148 50308 Hartmannella vermiformis mitochondrion, complete genome blastn 410 298 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24808029 24808029 PRJNA605033_P_NODE_165900_length_182_cov_4.612245_g164331_i0 PRJNA605033 165900 182 4.612245 8.3942859 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 337 3.82e-88   NTclustered gi|292559443|ref|NC_013986.1| 5778 g164331 i0 100 1.15934065934066 182 0 100 0 1 182 17336 17155 Hartmannella vermiformis mitochondrion, complete genome blastn 211 337 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24808634 24808634 PRJNA605033_P_NODE_225820_length_156_cov_3.702479_g224251_i0 PRJNA605033 225820 156 3.702479 5.77586724 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 289 9e-74   NTclustered gi|292559443|ref|NC_013986.1| 5778 g224251 i0 100 13.1282051282051 156 0 100 0 1 156 37391 37546 Hartmannella vermiformis mitochondrion, complete genome blastn 2048 289 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26827063 26827063 PRJNA605033_P_NODE_84721_length_222_cov_2.336898_g83152_i0 PRJNA605033 84721 222 2.336898 5.18791356 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 48.1 3.28e-4   NR KYQ89350.1 361077 g83152 i0 87 0.310810810810811 23 3 31.1 0 148 216 161 183 KYQ89350.1 hypothetical protein DLAC_11801 [Tieghemostelium lacteum] diamond 69 48.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;