RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA603943" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA603943 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6956207 6956207 PRJNA603943_P_NODE_61666_length_246_cov_0.890173_g61474_i0 PRJNA603943 61666 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 84 1.11e-16   NR PKL21439.1 2013836 g61474 i0 50.6 1.84146341463415 77 38 93.9 0 245 15 313 389 PKL21439.1 MAG: D-xylose ABC transporter ATP-binding protein [Spirochaetae bacterium HGW-Spirochaetae-4] diamond 453 84 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetae bacterium HGW-Spirochaetae-4
10781415 10781415 PRJNA603943_P_NODE_36849_length_303_cov_1.004348_g36657_i0 PRJNA603943 36849 303 1.004348 3.04317444 Treponema succinifaciens 167 Bacteria Bacteria 531 2.9699999999999993e-146   NTclustered gi|2189493055|gb|CP091738.1| 167 g36657 i0 99.655 0.957095709570957 290 1 96 0 14 303 1983183 1982894 MAG: Treponema succinifaciens isolate nC27_bin.114.fa chromosome blastn 290 531 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema succinifaciens
17154148 17154148 PRJNA603943_P_NODE_12454_length_462_cov_0.928021_g12262_i0 PRJNA603943 12454 462 0.928021 4.28745702 Treponema peruense 2787628 Bacteria Bacteria 754 0   NTclustered gi|1946838279|gb|CP064936.1| 2787628 g12262 i0 96.104 5.73376623376623 462 18 100 0 1 462 1771422 1770961 Treponema peruense strain RCC2812 chromosome, complete genome blastn 2649 754 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema peruense
21544998 21544998 PRJNA603943_P_NODE_31017_length_325_cov_1.146825_g30825_i0 PRJNA603943 31017 325 1.146825 3.72718125 root 1 Root_unresolved Root_unresolved 507 5.42e-139   NTclustered gi|2189493055|gb|CP091738.1| 167 g30825 i0 97.945 103.363076923077 292 6 90 0 1 292 1984054 1983763 MAG: Treponema succinifaciens isolate nC27_bin.114.fa chromosome blastn 33593 512 0.990234375 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema succinifaciens
26826947 26826947 PRJNA603943_P_NODE_48061_length_266_cov_1.000000_g47869_i0 PRJNA603943 48061 266 1 2.66 Treponema sp. 166 Bacteria Bacteria 51.2 5.06e-5   NR MCR5495664.1 166 g47869 i0 46.8 0.530075187969925 47 24 53 1 124 264 18 63 MCR5495664.1 NAD-dependent DNA ligase LigA [Treponema sp.] diamond 141 51.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
27427827 27427827 PRJNA603943_P_NODE_11123_length_484_cov_0.980535_g10932_i0 PRJNA603943 11123 484 0.980535 4.7457894 Spirochaetota bacterium 2202144 Bacteria Bacteria 61.2 1.62e-7   NR MEW6527263.1 2202144 g10932 i0 31.9 1.30165289256198 91 60 55.2 1 180 446 4 94 MEW6527263.1 SMC family ATPase [Spirochaetota bacterium] diamond 630 61.2 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29006712 29006712 PRJNA603943_P_NODE_38688_length_296_cov_1.381166_g38496_i0 PRJNA603943 38688 296 1.381166 4.08825136 Spirochaetia bacterium 2053615 Bacteria Bacteria 49.3 3.2e-4   NR GHU72973.1 2053615 g38496 i0 34.7 1.07432432432432 72 41 73 1 5 220 276 341 GHU72973.1 LPS 1,2-glucosyltransferase [Spirochaetia bacterium] diamond 318 49.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
31438708 31438708 PRJNA603943_P_NODE_31756_length_322_cov_1.236948_g31564_i0 PRJNA603943 31756 322 1.236948 3.98297256 uncultured Brachyspira sp. 221953 Bacteria Bacteria 80.5 4.17e-15   NR WP_288695429.1 221953 g31564 i0 39.8 2.01242236024845 108 59 98.8 2 319 2 12 115 WP_288695429.1 O-antigen polysaccharide polymerase Wzy, partial [uncultured Brachyspira sp.] diamond 648 80.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira uncultured Brachyspira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;