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contig_metadata

33 rows where bioproject = "PRJNA603943" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 33 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
577077 577077 PRJNA603943_P_NODE_35441_length_308_cov_1.085106_g35249_i0 PRJNA603943 35441 308 1.085106 3.34212648 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 149 4.07e-39   NR XP_024573305.1 4781 g35249 i0 73.7 12.5064935064935 95 25 92.5 0 23 307 496 590 XP_024573305.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a-like [Plasmopara halstedii] diamond 3852 150 0.993333333333333 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
1853650 1853650 PRJNA603943_P_NODE_6262_length_613_cov_12.059259_g6076_i0 PRJNA603943 6262 613 12.059259 73.92325767 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 3.3600000000000007e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g6076 i0 79.05 13.6933115823817 358 71 58 4 104 459 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 8394 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
3127407 3127407 PRJNA603943_P_NODE_12783_length_457_cov_1.156250_g12591_i0 PRJNA603943 12783 457 1.15625 5.2840625 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 266 9.87e-80   NR KAG2530555.1 325452 g12591 i0 86.8 8.92122538293217 151 20 99.1 0 455 3 985 1135 KAG2530555.1 hypothetical protein JM16_000889 [Phytophthora kernoviae] diamond 4077 268 0.992537313432836 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
3127454 3127454 PRJNA603943_P_NODE_14223_length_437_cov_2.538462_g14031_i0 PRJNA603943 14223 437 2.538462 11.09307894 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 194 4.65e-60   NR CCA22399.1 890382 g14031 i0 66.4 7.12585812356979 149 45 98.9 1 5 436 21 169 CCA22399.1 40S ribosomal protein S82 putative [Albugo laibachii Nc14] diamond 3114 194 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6955708 6955708 PRJNA603943_P_NODE_4506_length_704_cov_1.568938_g4327_i0 PRJNA603943 4506 704 1.568938 11.04532352 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 219 7.880000000000001e-64   NR CAH0519927.1 622444 g4327 i0 68.9 3.65625 167 43 69.5 2 703 215 439 600 CAH0519927.1 unnamed protein product [Peronospora belbahrii] diamond 2574 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
8229875 8229875 PRJNA603943_P_NODE_20427_length_380_cov_1.003257_g20235_i0 PRJNA603943 20427 380 1.003257 3.8123766 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 246 1.55e-60   NTclustered gi|59894163|gb|AY729864.1| 74557 g20235 i0 78.904 86.7868421052632 365 75 96 2 17 380 1307 944 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 32979 246 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
12056873 12056873 PRJNA603943_P_NODE_54210_length_250_cov_1.305085_g54018_i0 PRJNA603943 54210 250 1.305085 3.2627125 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 157 8.54e-47   NR RLN90219.1 2483409 g54018 i0 87.8 1.968 82 10 98.4 0 3 248 121 202 RLN90219.1 hypothetical protein BBJ28_00016662 [Nothophytophthora sp. Chile5] diamond 492 157 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
13897096 13897096 PRJNA603943_P_NODE_39311_length_294_cov_1.321267_g39119_i0 PRJNA603943 39311 294 1.321267 3.88452498 root 1 Root_unresolved Root_unresolved 96.3 1.06e-20   NR TMW60811.1 41045 g39119 i0 65.2 1.37755102040816 66 22 67.3 1 14 211 269 333 TMW60811.1 hypothetical protein Poli38472_000853 [Pythium oligandrum] diamond 405 96.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
14605985 14605985 PRJNA603943_P_NODE_35052_length_309_cov_1.305085_g34860_i0 PRJNA603943 35052 309 1.305085 4.03271265 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 252 2.65e-62   NTclustered gi|675210554|ref|XM_008915914.1| 761204 g34860 i0 81.494 72.7281553398058 308 55 99 2 2 308 571 877 Phytophthora parasitica INRA-310 ATP-dependent RNA helicase eIF4A partial mRNA blastn 22473 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
16445923 16445923 PRJNA603943_P_NODE_5333_length_656_cov_2.355060_g5151_i0 PRJNA603943 5333 656 2.35506 15.4491936 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 488 4.199999999999999e-133   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g5151 i0 86.057 67.7256097560976 459 59 70 4 50 506 28 483 Pythium splendens calmodulin mRNA, complete cds blastn 44428 492 0.991869918699187 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
17154864 17154864 PRJNA603943_P_NODE_37994_length_299_cov_0.902655_g37802_i0 PRJNA603943 37994 299 0.902655 2.69893845 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 191 5.65e-44   NTclustered gi|301114940|ref|XM_002999194.1| 403677 g37802 i0 79.699 11.3979933110368 266 52 89 2 35 299 854 590 Phytophthora infestans T30-4 pyrophosphate-energized vacuolar membrane proton pump, putative (PITG_05615), partial mRNA blastn 3408 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
19702979 19702979 PRJNA603943_P_NODE_1036_length_1290_cov_5.600657_g931_i0 PRJNA603943 1036 1290 5.600657 72.2484753 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 576 3.44e-203   NR TMW60420.1 41045 g931 i0 72.2 4.51395348837209 388 107 90.2 1 1263 100 1 387 TMW60420.1 hypothetical protein Poli38472_000462 [Pythium oligandrum] diamond 5823 580 0.993103448275862 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
19704721 19704721 PRJNA603943_P_NODE_8576_length_538_cov_1.103226_g8389_i0 PRJNA603943 8576 538 1.103226 5.93535588 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 277 4.44e-86   NR XP_067820719.1 4779 g8389 i0 79 23.3252788104089 176 37 98.1 0 11 538 284 459 XP_067820719.1 hypothetical protein CCR75_006332 [Bremia lactucae] diamond 12549 279 0.992831541218638 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
20978687 20978687 PRJNA603943_P_NODE_10697_length_491_cov_8.131579_g10506_i0 PRJNA603943 10697 491 8.131579 39.92605289 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.61e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g10506 i0 80.533 68.8146639511202 375 65 75 4 121 488 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33788 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
26776907 26776907 PRJNA603943_P_NODE_70361_length_241_cov_0.916667_g70169_i0 PRJNA603943 70361 241 0.916667 2.20916747 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 125 3.969999999999999e-31   NR DAZ99178.1 4803 g70169 i0 76.3 12.9460580912863 80 19 99.6 0 241 2 878 957 DAZ99178.1 TPA: hypothetical protein N0F65_008211 [Lagenidium giganteum] diamond 3120 126 0.992063492063492 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
26984972 26984972 PRJNA603943_P_NODE_47622_length_267_cov_1.412371_g47430_i0 PRJNA603943 47622 267 1.412371 3.77103057 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 77.8 1.84e-14   NR XP_067748043.1 164328 g47430 i0 44.2 4.74157303370786 86 48 96.6 0 267 10 232 317 XP_067748043.1 Methylmalonic aciduria type A-like protein, mitochondrial [Phytophthora ramorum] diamond 1266 77.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
28040862 28040862 PRJNA603943_P_NODE_56705_length_249_cov_0.875000_g56513_i0 PRJNA603943 56705 249 0.875 2.17875 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 68.6 2.92e-11   NR TMW60911.1 41045 g56513 i0 40.8 6.07228915662651 71 42 85.5 0 37 249 44 114 TMW60911.1 hypothetical protein Poli38472_000953 [Pythium oligandrum] diamond 1512 68.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28216707 28216707 PRJNA603943_P_NODE_47926_length_266_cov_1.202073_g47734_i0 PRJNA603943 47926 266 1.202073 3.19751418 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 55.8 1.21e-6   NR RLN92355.1 2483409 g47734 i0 33.7 1.00375939849624 89 49 99.2 2 3 266 736 815 RLN92355.1 hypothetical protein BBJ28_00014153 [Nothophytophthora sp. Chile5] diamond 267 55.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
28753700 28753700 PRJNA603943_P_NODE_48867_length_263_cov_1.215789_g48675_i0 PRJNA603943 48867 263 1.215789 3.19752507 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 146 2.26e-39   NR TMW67383.1 41045 g48675 i0 79.3 7.93916349809886 87 18 99.2 0 263 3 311 397 TMW67383.1 hypothetical protein Poli38472_012499 [Pythium oligandrum] diamond 2088 146 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
28893129 28893129 PRJNA603943_P_NODE_55648_length_250_cov_0.870056_g55456_i0 PRJNA603943 55648 250 0.870056 2.17514 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 92 1.3e-20   NR KAG7399266.1 109152 g55456 i0 51.3 1.92 80 39 96 0 245 6 92 171 KAG7399266.1 hypothetical protein PHYBOEH_009305 [Phytophthora boehmeriae] diamond 480 92.4 0.995670995670996 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
29051322 29051322 PRJNA603943_P_NODE_60908_length_246_cov_1.502890_g60716_i0 PRJNA603943 60908 246 1.50289 3.6971094 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.98e-15   NR DBA03615.1 4803 g60716 i0 58.1 4.17073170731707 62 26 75.6 0 2 187 1186 1247 DBA03615.1 TPA: hypothetical protein N0F65_006794 [Lagenidium giganteum] diamond 1026 80.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30124606 30124606 PRJNA603943_P_NODE_42652_length_283_cov_1.123810_g42460_i0 PRJNA603943 42652 283 1.12381 3.1803823 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 101 1.2500000000000001e-22   NR OQR87505.1 74557 g42460 i0 48.3 2.81978798586572 87 45 92.2 0 10 270 1807 1893 OQR87505.1 dynein heavy chain 6, axonemal [Thraustotheca clavata] diamond 798 101 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
30661922 30661922 PRJNA603943_P_NODE_36513_length_304_cov_1.294372_g36321_i0 PRJNA603943 36513 304 1.294372 3.93489088 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 141 2.0800000000000002e-36   NR DAZ96502.1 4803 g36321 i0 73.3 7.02631578947368 101 27 99.7 0 1 303 1485 1585 DAZ96502.1 TPA: hypothetical protein N0F65_008053 [Lagenidium giganteum] diamond 2136 142 0.992957746478873 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31420439 31420439 PRJNA603943_P_NODE_57656_length_248_cov_1.080000_g57464_i0 PRJNA603943 57656 248 1.08 2.6784 root 1 Root_unresolved Root_unresolved 124 2.11e-32   NR KAJ0403308.1 114742 g57464 i0 69.1 2.96370967741935 81 25 98 0 246 4 134 214 KAJ0403308.1 hypothetical protein P43SY_009342 [Pythium insidiosum] diamond 735 125 0.992 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31452248 31452248 PRJNA603943_P_NODE_56356_length_249_cov_0.875000_g56164_i0 PRJNA603943 56356 249 0.875 2.17875 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 87.8 5e-18   NR OQS02194.1 74557 g56164 i0 53.3 2.68674698795181 75 34 90.4 1 1 225 403 476 OQS02194.1 26S proteasome non-ATPase regulatory subunit 3 [Thraustotheca clavata] diamond 669 87.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31691834 31691834 PRJNA603943_P_NODE_30237_length_328_cov_1.203922_g30045_i0 PRJNA603943 30237 328 1.203922 3.94886416 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00816   NR KAF0685444.1 120398 g30045 i0 56.1 0.896341463414634 98 43 89.6 0 33 326 278 375 KAF0685444.1 hypothetical protein As57867_022588 [Aphanomyces stellatus] diamond 294 45.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
31736587 31736587 PRJNA603943_P_NODE_10757_length_490_cov_3.306954_g10566_i0 PRJNA603943 10757 490 3.306954 16.2040746 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 161 5.939999999999999e-43   NR XP_024573476.1 4781 g10566 i0 64.7 8.36938775510204 116 41 71 0 21 368 533 648 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 4101 162 0.993827160493827 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
31894875 31894875 PRJNA603943_P_NODE_16557_length_412_cov_1.135693_g16365_i0 PRJNA603943 16557 412 1.135693 4.67905516 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99 5.5600000000000006e-21   NR GLE00034.1 114742 g16365 i0 54.9 6.09466019417476 91 39 64.8 1 409 143 303 393 GLE00034.1 hypothetical protein PINS_up008761 [Pythium insidiosum] diamond 2511 99 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31894876 31894876 PRJNA603943_P_NODE_31317_length_324_cov_0.920319_g31125_i0 PRJNA603943 31317 324 0.920319 2.98183356 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 112 1.61e-26   NR POM67585.1 4796 g31125 i0 57.4 15.4074074074074 108 44 99.1 2 3 323 327 433 POM67585.1 Pyrophosphatase, partial [Phytophthora palmivora] diamond 4992 112 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
32053082 32053082 PRJNA603943_P_NODE_58378_length_248_cov_0.880000_g58186_i0 PRJNA603943 58378 248 0.88 2.1824 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 140 7.659999999999999e-37   NR CCI50857.1 65357 g58186 i0 68.3 3.96774193548387 82 26 99.2 0 1 246 354 435 CCI50857.1 unnamed protein product [Albugo candida] diamond 984 141 0.99290780141844 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32084727 32084727 PRJNA603943_P_NODE_28438_length_336_cov_0.863118_g28246_i0 PRJNA603943 28438 336 0.863118 2.90007648 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.0157   NR DBA04414.1 4803 g28246 i0 40.4 1.16964285714286 47 28 42 0 1 141 342 388 DBA04414.1 TPA: hypothetical protein N0F65_010010 [Lagenidium giganteum] diamond 393 45.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32179847 32179847 PRJNA603943_P_NODE_8258_length_546_cov_1.780127_g8071_i0 PRJNA603943 8258 546 1.780127 9.71949342 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 95.1 2.8e-20   NR KAG1703520.1 4784 g8071 i0 61.1 7.18681318681319 72 28 39.6 0 531 316 172 243 KAG1703520.1 hypothetical protein DVH05_007467 [Phytophthora capsici] diamond 3924 95.9 0.991657977059437 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
32653565 32653565 PRJNA603943_P_NODE_59880_length_247_cov_0.885057_g59688_i0 PRJNA603943 59880 247 0.885057 2.18609079 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 102 2.34e-26   NR KAF0724467.1 100861 g59688 i0 82 1.48178137651822 61 11 74.1 0 3 185 16 76 KAF0724467.1 hypothetical protein Ae201684_016874 [Aphanomyces euteiches] diamond 366 102 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;