RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA603943" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA603943 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9505436 9505436 PRJNA603943_P_NODE_34368_length_312_cov_0.995816_g34176_i0 PRJNA603943 34368 312 0.995816 3.10694592 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 346 1.19e-90   NTclustered gi|2874253978|emb|OY970303.1| 412054 g34176 i0 91.12 411.772435897436 259 17 82 6 57 312 1904483 1904738 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 128473 346 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23529985 23529985 PRJNA603943_P_NODE_49419_length_261_cov_1.382979_g49227_i0 PRJNA603943 49419 261 1.382979 3.60957519 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 361 3.48e-95   NTclustered gi|2874253978|emb|OY970303.1| 412054 g49227 i0 91.571 4 261 22 100 0 1 261 3485892 3485632 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1044 361 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26763436 26763436 PRJNA603943_P_NODE_31281_length_324_cov_1.007968_g31089_i0 PRJNA603943 31281 324 1.007968 3.26581632 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 121 9.21e-30   NR MCH6547985.1 2026742 g31089 i0 50.9 3 108 52 100 1 324 1 159 265 MCH6547985.1 aspartate aminotransferase family protein [Gemmatimonadota bacterium] diamond 972 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27648765 27648765 PRJNA603943_P_NODE_63304_length_245_cov_0.895349_g63112_i0 PRJNA603943 63304 245 0.895349 2.19360505 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.0369   NR MDB4899669.1 2026742 g63112 i0 50 0.489795918367347 40 20 49 0 177 58 267 306 MDB4899669.1 Polynucleotide adenylyltransferase region [Gemmatimonadota bacterium] diamond 120 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27680531 27680531 PRJNA603943_P_NODE_63524_length_245_cov_0.895349_g63332_i0 PRJNA603943 63524 245 0.895349 2.19360505 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 71.2 5.52e-14   NR HZI73724.1 2448054 g63332 i0 92.3 0.477551020408163 39 3 47.8 0 129 245 1 39 HZI73724.1 hypothetical protein [Gemmatimonadales bacterium] diamond 117 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27869485 27869485 PRJNA603943_P_NODE_17645_length_402_cov_0.896657_g17453_i0 PRJNA603943 17645 402 0.896657 3.60456114 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.5 0.0174   NR MDH3457777.1 2026742 g17453 i0 41.7 0.447761194029851 60 24 36.6 2 168 314 29 88 MDH3457777.1 hypothetical protein [Gemmatimonadota bacterium] diamond 180 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29353789 29353789 PRJNA603943_P_NODE_63169_length_245_cov_0.895349_g62977_i0 PRJNA603943 63169 245 0.895349 2.19360505 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.5 0.0177   NR HEY6224233.1 2448054 g62977 i0 43.6 1.43265306122449 39 22 47.8 0 114 230 156 194 HEY6224233.1 beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein [Gemmatimonadales bacterium] diamond 351 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;