RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA603943" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA603943 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27174604 27174604 PRJNA603943_P_NODE_67962_length_242_cov_0.911243_g67770_i0 PRJNA603943 67962 242 0.911243 2.20520806 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 65.5 2.32e-10   NR SPQ96905.1 37360 g67770 i0 47.5 0.756198347107438 61 32 75.6 0 238 56 224 284 SPQ96905.1 unnamed protein product [Plasmodiophora brassicae] diamond 183 65.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30901535 30901535 PRJNA603943_P_NODE_64694_length_244_cov_0.900585_g64502_i0 PRJNA603943 64694 244 0.900585 2.1974274 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 61.6 3.52e-9   NR CEO98403.1 37360 g64502 i0 54.5 0.676229508196721 55 25 67.6 0 2 166 143 197 CEO98403.1 hypothetical protein PBRA_006517 [Plasmodiophora brassicae] diamond 165 61.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32766547 32766547 PRJNA603943_P_NODE_53160_length_251_cov_0.865169_g52968_i0 PRJNA603943 53160 251 0.865169 2.17157419 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 49.7 1.36e-4   NR SPR00725.1 37360 g52968 i0 32.9 0.944223107569721 79 48 88.4 2 248 27 137 215 SPR00725.1 unnamed protein product [Plasmodiophora brassicae] diamond 237 49.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;