RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA603943" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA603943 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4404222 4404222 PRJNA603943_P_NODE_15944_length_418_cov_1.211594_g15752_i0 PRJNA603943 15944 418 1.211594 5.06446292 Fusobacterium hwasookii 1583098 Bacteria Bacteria 773 0   NTclustered gi|1890959825|gb|CP060112.1| 1583098 g15752 i0 100 485.153110047847 418 0 100 0 1 418 544946 545363 Fusobacterium hwasookii strain KCOM 1249 chromosome, complete genome blastn 202794 773 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
10782183 10782183 PRJNA603943_P_NODE_63589_length_245_cov_0.895349_g63397_i0 PRJNA603943 63589 245 0.895349 2.19360505 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 414 2.45e-111   NTclustered gi|2028889048|gb|CP072378.1| 712362 g63397 i0 97.143 1 245 7 100 0 1 245 250296 250052 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 245 414 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221
15171336 15171336 PRJNA603943_P_NODE_33752_length_314_cov_1.526971_g33560_i0 PRJNA603943 33752 314 1.526971 4.79468894 Fusobacterium 848 Bacteria Bacteria 575 1.4099999999999994e-159   NTclustered gi|1370537877|gb|CP028108.1| 860 g33560 i0 99.682 488.015923566879 314 1 100 0 1 314 463041 462728 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 153237 580 0.991379310344828 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
20269725 20269725 PRJNA603943_P_NODE_5556_length_645_cov_1.480769_g5372_i0 PRJNA603943 5556 645 1.480769 9.55096005 Fusobacterium 848 Bacteria Bacteria 1192 0   NTclustered gi|2706069597|gb|CP077108.1| 76857 g5372 i0 100 486.415503875969 645 0 100 0 1 645 1185919 1185275 Fusobacterium polymorphum strain KCOM1281 chromosome, complete genome blastn 313738 1192 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
27333022 27333022 PRJNA603943_P_NODE_63443_length_245_cov_0.895349_g63251_i0 PRJNA603943 63443 245 0.895349 2.19360505 Candidatus Stercorousia faecigallinarum 2840954 Bacteria Bacteria 143 5.2099999999999996e-42   NR HIT92483.1 2840954 g63251 i0 93.2 1.78775510204082 73 5 89.4 0 243 25 56 128 HIT92483.1 DUF2924 domain-containing protein [Candidatus Stercorousia faecigallinarum] diamond 438 143 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Candidatus Stercorousia Candidatus Stercorousia faecigallinarum
27409504 27409504 PRJNA603943_P_NODE_53863_length_251_cov_0.865169_g53671_i0 PRJNA603943 53863 251 0.865169 2.17157419 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 108 4.16e-26   NR CDE91856.1 1262901 g53671 i0 100 1.29083665338645 54 0 64.5 0 251 90 300 353 CDE91856.1 geranylgeranyl reductase [Fusobacterium sp. CAG:815] diamond 324 108 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:815
29132763 29132763 PRJNA603943_P_NODE_51849_length_253_cov_1.283333_g51657_i0 PRJNA603943 51849 253 1.283333 3.24683249 Fusobacterium sp. CAG:815 1262901 Bacteria Bacteria 171 4.31e-51   NR CDE92308.1 1262901 g51657 i0 100 0.984189723320158 83 0 98.4 0 3 251 183 265 CDE92308.1 unknown [Fusobacterium sp. CAG:815] diamond 249 171 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp. CAG:815
30838246 30838246 PRJNA603943_P_NODE_18814_length_392_cov_1.448276_g18622_i0 PRJNA603943 18814 392 1.448276 5.67724192 Candidatus Stercorousia faecigallinarum 2840954 Bacteria Bacteria 166 1.77e-46   NR HIT91674.1 2840954 g18622 i0 62.3 0.994897959183674 130 49 99.5 0 3 392 72 201 HIT91674.1 phage terminase large subunit [Candidatus Stercorousia faecigallinarum] diamond 390 166 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Candidatus Stercorousia Candidatus Stercorousia faecigallinarum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;