RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA603943", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA603943 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8229949 8229949 PRJNA603943_P_NODE_22887_length_364_cov_1.587629_g22695_i0 PRJNA603943 22887 364 1.587629 5.77896956 Methanobrevibacter sp. 66852 Archaea Archaea 216 4.89e-68   NR MBO7696889.1 66852 g22695 i0 79.3 0.997252747252747 121 25 99.7 0 363 1 158 278 MBO7696889.1 hypothetical protein [Methanobrevibacter sp.] diamond 363 216 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27977583 27977583 PRJNA603943_P_NODE_33325_length_316_cov_1.267490_g33133_i0 PRJNA603943 33325 316 1.26749 4.0052684 root 1 Root_unresolved Root_unresolved 104 2.08e-24   NR MBO7733115.1 66852 g33133 i0 49 2.99050632911392 104 51 96.8 2 10 315 198 301 MBO7733115.1 DUF2184 domain-containing protein [Methanobrevibacter sp.] diamond 945 104 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28374771 28374771 PRJNA603943_P_NODE_58446_length_248_cov_0.880000_g58254_i0 PRJNA603943 58446 248 0.88 2.1824 Methanobrevibacter sp. 66852 Archaea Archaea 83.6 1.69e-16   NR MBQ6628522.1 66852 g58254 i0 49.4 0.979838709677419 81 38 98 1 248 6 282 359 MBQ6628522.1 tail fiber protein [Methanobrevibacter sp.] diamond 243 83.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30079794 30079794 PRJNA603943_P_NODE_35632_length_307_cov_1.316239_g35440_i0 PRJNA603943 35632 307 1.316239 4.04085373 Methanobrevibacter sp. 66852 Archaea Archaea 172 3.78e-51   NR MBO7696889.1 66852 g35440 i0 78.8 0.96742671009772 99 21 96.7 0 3 299 30 128 MBO7696889.1 hypothetical protein [Methanobrevibacter sp.] diamond 297 172 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;