RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA602115" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA602115 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26998138 26998138 PRJNA602115_P_NODE_9862_length_206_cov_0.882759_g9837_i0 PRJNA602115 9862 206 0.882759 1.81848354 Myxococcia 32015 Bacteria Bacteria 56.6 2.87e-7   NR MSP59513.1 2026763 g9837 i0 65 2.89805825242718 40 13 58.3 1 201 82 184 222 MSP59513.1 hypothetical protein [Myxococcales bacterium] diamond 597 57 0.992982456140351 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30206069 30206069 PRJNA602115_P_NODE_4832_length_286_cov_1.137778_g4807_i0 PRJNA602115 4832 286 1.137778 3.25404508 Archangium sp. 1872627 Bacteria Bacteria 53.1 1.32e-5   NR MBL8933979.1 1872627 g4807 i0 30 1.88811188811189 90 58 89.2 2 6 260 276 365 MBL8933979.1 hypothetical protein [Archangium sp.] diamond 540 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;