RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26649857 26649857 PRJNA600413_P_NODE_107061_length_167_cov_0.864407_g106360_i0 PRJNA600413 107061 167 0.864407 1.44355969 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 47 4.24e-4   NR KAF4726361.1 32597 g106360 i0 45.8 6.03592814371257 48 25 86.2 1 160 17 338 384 KAF4726361.1 hypothetical protein FOZ62_018469 [Perkinsus olseni] diamond 1008 47 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
27743586 27743586 PRJNA600413_P_NODE_127704_length_164_cov_0.886957_g127003_i0 PRJNA600413 127704 164 0.886957 1.45460948 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0129   NR KAF4690638.1 32597 g127003 i0 53.7 3 41 19 75 0 150 28 261 301 KAF4690638.1 hypothetical protein FOZ60_017130 [Perkinsus olseni] diamond 492 42.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31628511 31628511 PRJNA600413_P_NODE_137336_length_162_cov_1.805310_g136635_i0 PRJNA600413 137336 162 1.80531 2.9246022 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 40.8 0.0468   NR XP_002764639.1 423536 g136635 i0 46.3 0.759259259259259 41 22 75.9 0 3 125 111 151 XP_002764639.1 60S ribosomal protein L3, putative [Perkinsus marinus ATCC 50983] diamond 123 40.8 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;