RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413" and tax_phylum = "Nitrososphaerota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA600413 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3124285 3124285 PRJNA600413_P_NODE_137643_length_162_cov_1.690265_g136942_i0 PRJNA600413 137643 162 1.690265 2.7382293 Nitrosotalea devaniterrae 1078905 Archaea Archaea 193 7.61e-45   NTclustered gi|1003583480|emb|LN890280.1| 1078905 g136942 i0 88.199 1.38888888888889 161 19 99 0 2 162 1594808 1594648 Candidatus Nitrosotalea devanaterra genome assembly, chromosome: 1 blastn 225 193 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae
4969954 4969954 PRJNA600413_P_NODE_134244_length_163_cov_0.894737_g133543_i0 PRJNA600413 134244 163 0.894737 1.45842131 Nitrososphaeria 1643678 Archaea Archaea 107 6.22e-28   NR WP_101010668.1 1499975 g133543 i0 96.2 14.6319018404908 53 2 97.5 0 161 3 102 154 WP_101010668.1 tRNA-intron lyase [Nitrosotalea sinensis] diamond 2385 108 0.990740740740741 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea sinensis
29258587 29258587 PRJNA600413_P_NODE_127349_length_164_cov_0.886957_g126648_i0 PRJNA600413 127349 164 0.886957 1.45460948 Nitrososphaera sp. 1971748 Archaea Archaea 91.7 4.1800000000000003e-22   NR HEU0046508.1 1971748 g126648 i0 74.1 2.89024390243902 54 14 98.8 0 162 1 8 61 HEU0046508.1 EamA family transporter [Nitrososphaera sp.] diamond 474 91.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;