RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27048383 27048383 PRJNA600413_P_NODE_98082_length_169_cov_1.700000_g97381_i0 PRJNA600413 98082 169 1.7 2.873 Minisyncoccota bacterium 2053589 Bacteria Bacteria 62.4 1.49e-9   NR HEY4526593.1 2053589 g97381 i0 50 0.923076923076923 52 26 92.3 0 158 3 12 63 HEY4526593.1 acyl-CoA dehydrogenase family protein [Candidatus Paceibacterota bacterium] diamond 156 62.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29132690 29132690 PRJNA600413_P_NODE_109729_length_166_cov_0.871795_g109028_i0 PRJNA600413 109729 166 0.871795 1.4471797 Minisyncoccota bacterium 2053589 Bacteria Bacteria 113 2e-27   NR HEY4500910.1 2053589 g109028 i0 94.4 4.87951807228916 54 3 97.6 0 3 164 140 193 HEY4500910.1 ATP cone domain-containing protein [Candidatus Paceibacterota bacterium] diamond 810 113 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29398418 29398418 PRJNA600413_P_NODE_134129_length_163_cov_0.894737_g133428_i0 PRJNA600413 134129 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 52 6.61e-6   NR MFA6177868.1 2053589 g133428 i0 58.1 4.28834355828221 43 18 79.1 0 18 146 29 71 MFA6177868.1 VanW family protein [Candidatus Paceibacterota bacterium] diamond 699 52.4 0.99236641221374 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;