RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26984902 26984902 PRJNA600413_P_NODE_118162_length_165_cov_0.879310_g117461_i0 PRJNA600413 118162 165 0.87931 1.4508615 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00688   NR MES1918652.1 126728 g117461 i0 37.7 0.963636363636364 53 33 96.4 0 159 1 1 53 MES1918652.1 hypothetical protein [Bonamia ostreae] diamond 159 43.5 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
27332951 27332951 PRJNA600413_P_NODE_118323_length_165_cov_0.879310_g117622_i0 PRJNA600413 118323 165 0.87931 1.4508615 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 56.6 1.58e-7   NR CEP01464.1 37360 g117622 i0 53.2 0.854545454545454 47 22 85.5 0 143 3 197 243 CEP01464.1 hypothetical protein PBRA_002070 [Plasmodiophora brassicae] diamond 141 56.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29132709 29132709 PRJNA600413_P_NODE_150829_length_161_cov_0.910714_g150128_i0 PRJNA600413 150829 161 0.910714 1.46624954 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00137   NR CEP02048.1 37360 g150128 i0 35.5 2.31055900621118 62 31 98.8 2 3 161 335 396 CEP02048.1 hypothetical protein PBRA_002313 [Plasmodiophora brassicae] diamond 372 45.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;