RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA600413" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA600413 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18427264 18427264 PRJNA600413_P_NODE_90815_length_173_cov_1.645161_g90114_i0 PRJNA600413 90815 173 1.645161 2.84612853 Chlorobi bacterium OLB7 1619898 Bacteria Bacteria 93.2 2.43e-20   NR KXK57749.1 1619898 g90114 i0 74.5 0.953757225433526 55 14 95.4 0 167 3 368 422 KXK57749.1 MAG: peptide/nickel transport system substrate-binding protein [Chlorobi bacterium OLB7] diamond 165 93.2 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium OLB7
28261600 28261600 PRJNA600413_P_NODE_121066_length_165_cov_0.879310_g120365_i0 PRJNA600413 121066 165 0.87931 1.4508615 Pseudomonadati 3379134 Bacteria Bacteria 67 9.45e-12   NR MCG8343443.1 2723030 g120365 i0 54.5 2 55 25 100 0 1 165 24 78 MCG8343443.1 GNAT family N-acetyltransferase [Chlorobiales bacterium] diamond 330 67 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;