RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27522217 27522217 PRJNA600413_P_NODE_68503_length_187_cov_1.811594_g67802_i0 PRJNA600413 68503 187 1.811594 3.38768078 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 45.4 0.00196   NR MCF7812514.1 2044595 g67802 i0 36.1 0.978609625668449 61 39 97.9 0 2 184 163 223 MCF7812514.1 fructose-bisphosphate aldolase class I [Candidatus Altimarinota bacterium] diamond 183 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30964725 30964725 PRJNA600413_P_NODE_157014_length_151_cov_3.000000_g156313_i0 PRJNA600413 157014 151 3 4.53 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 52 5.56e-6   NR NJK47563.1 2044595 g156313 i0 69.8 0.854304635761589 43 13 85.4 0 21 149 319 361 NJK47563.1 LysR family transcriptional regulator [Candidatus Altimarinota bacterium] diamond 129 52 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31610275 31610275 PRJNA600413_P_NODE_111276_length_166_cov_0.871795_g110575_i0 PRJNA600413 111276 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 84.7 2.03e-17   NR MBP7806509.1 2044595 g110575 i0 85.2 4.87951807228916 54 8 97.6 0 164 3 428 481 MBP7806509.1 DNA-directed RNA polymerase subunit beta' [Candidatus Altimarinota bacterium] diamond 810 84.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;