RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA600413", tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

  • Artverviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA600413 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4400709 4400709 PRJNA600413_P_NODE_122544_length_164_cov_2.200000_g121843_i0 PRJNA600413 122544 164 2.2 3.608 Lentivirus humimdef1 3418650 Viruses Viruses 276 7.46e-70   NTclustered gi|2725664213|gb|PP744075.1| 11676 g121843 i0 96.951 100.243902439024 164 5 100 0 1 164 166 329 HIV-1 isolate 11VI3 from Kenya nef protein (nef) gene, partial cds blastn 16440 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
6245871 6245871 PRJNA600413_P_NODE_32745_length_249_cov_1.640000_g32044_i0 PRJNA600413 32745 249 1.64 4.0836 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|9626962|ref|NC_001502.1| 11809 g32044 i0 100 110.767068273092 249 0 100 0 1 249 357 109 Moloney murine sarcoma virus, complete genome blastn 27581 460 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus momursar
14603207 14603207 PRJNA600413_P_NODE_44292_length_219_cov_1.311765_g43591_i0 PRJNA600413 44292 219 1.311765 2.87276535 Lentivirus humimdef1 3418650 Viruses Viruses 377 2.81e-100   NTclustered gi|1130025786|gb|KY112119.1| 11676 g43591 i0 97.717 99.8538812785388 219 5 100 0 1 219 695 477 HIV-1 isolate CH212_SGA.2F10 from South Africa pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 21868 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
20268664 20268664 PRJNA600413_P_NODE_34136_length_244_cov_3.082051_g33435_i0 PRJNA600413 34136 244 3.082051 7.52020444 root 1 Root_unresolved Root_unresolved 451 1.86e-122   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g33435 i0 100 100 244 0 100 0 1 244 3625 3868 Moloney murine leukemia virus, complete genome blastn 24400 451 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
20975444 20975444 PRJNA600413_P_NODE_129097_length_164_cov_0.800000_g128396_i0 PRJNA600413 129097 164 0.8 1.312 Lentivirus humimdef1 3418650 Viruses Viruses 292 7.41e-75   NTclustered gi|408795695|gb|JX451878.1| 11676 g128396 i0 98.78 99.9939024390244 164 2 100 0 1 164 18 181 HIV-1 isolate 41952 from Switzerland integrase (pol) gene, partial cds blastn 16399 292 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
20976106 20976106 PRJNA600413_P_NODE_24057_length_290_cov_1.443983_g23356_i0 PRJNA600413 24057 290 1.443983 4.1875507 Lentivirus humimdef1 3418650 Viruses Viruses 464 2.9099999999999993e-126   NTclustered gi|4239648|gb|AF069672.1|AF069672 11676 g23356 i0 95.517 105.98275862069 290 13 100 0 1 290 8744 8455 HIV-1 isolate SE6594 from Uganda, gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; vpu pseudogene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds blastn 30735 464 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;