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contig_metadata

17 rows where bioproject = "PRJNA600413", tax_kingdom = "Orthornavirae" and tax_phylum = "Negarnaviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 17 ✖

tax_kingdom 1

  • Orthornavirae · 17 ✖

bioproject 1

  • PRJNA600413 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1141984 1141984 PRJNA600413_P_NODE_16181_length_359_cov_1.648387_g15480_i0 PRJNA600413 16181 359 1.648387 5.91770933 Coguvirus 2560118 Viruses Viruses 664 0   NTclustered gi|2019278450|gb|MW334941.1| 2024604 g15480 i0 100 24.6740947075209 359 0 100 0 1 359 3460 3102 Citrus concave gum-associated virus isolate CCGAV/FT159 RNA-dependent RNA polymerase gene, complete cds blastn 8858 664 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
1142176 1142176 PRJNA600413_P_NODE_33401_length_247_cov_1.287879_g32700_i0 PRJNA600413 33401 247 1.287879 3.18106113 Coguvirus 2560118 Viruses Viruses 457 4.05e-124   NTclustered gi|2125202293|gb|OK495690.1| 2024604 g32700 i0 100 25.8056680161943 247 0 100 0 1 247 291 537 Citrus concave gum-associated virus isolate CE-c3 segment RNA1, complete sequence blastn 6374 457 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
7519673 7519673 PRJNA600413_P_NODE_1346_length_1208_cov_5.570319_g1026_i0 PRJNA600413 1346 1208 5.570319 67.28945352 Coguvirus 2560118 Viruses Viruses 2226 0   NTclustered gi|2594666308|gb|OR640154.1| 2024604 g1026 i0 99.917 45.3948675496689 1208 1 100 0 1 1208 1494 2701 Citrus concave gum-associated virus isolate CCGaV_RNA2_T segment RNA2, complete sequence blastn 54837 2226 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
7520558 7520558 PRJNA600413_P_NODE_90446_length_173_cov_1.645161_g89745_i0 PRJNA600413 90446 173 1.645161 2.84612853 Coguvirus 2560118 Viruses Viruses 320 3.61e-83   NTclustered gi|2125202293|gb|OK495690.1| 2024604 g89745 i0 100 26.5722543352601 173 0 100 0 1 173 1454 1282 Citrus concave gum-associated virus isolate CE-c3 segment RNA1, complete sequence blastn 4597 320 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
12053260 12053260 PRJNA600413_P_NODE_33950_length_245_cov_1.561224_g33249_i0 PRJNA600413 33950 245 1.561224 3.8249988 Coguvirus citri 3052136 Viruses Viruses 448 2.41e-121   NTclustered gi|2019278450|gb|MW334941.1| 2024604 g33249 i0 99.592 20.9428571428571 245 1 100 0 1 245 1219 975 Citrus concave gum-associated virus isolate CCGAV/FT159 RNA-dependent RNA polymerase gene, complete cds blastn 5131 448 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
13895693 13895693 PRJNA600413_P_NODE_1071_length_1313_cov_6.392405_g795_i0 PRJNA600413 1071 1313 6.392405 83.93227765 Coguvirus 2560118 Viruses Viruses 2392 0   NTclustered gi|2594666308|gb|OR640154.1| 2024604 g795 i0 99.543 24.9352627570449 1313 6 100 0 1 1313 1325 13 Citrus concave gum-associated virus isolate CCGaV_RNA2_T segment RNA2, complete sequence blastn 32740 2392 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
13895886 13895886 PRJNA600413_P_NODE_137951_length_162_cov_1.353982_g137250_i0 PRJNA600413 137951 162 1.353982 2.19345084 Coguvirus 2560118 Viruses Viruses 298 1.57e-76   NTclustered gi|2758934013|gb|OR537855.1| 2024604 g137250 i0 100 22.8518518518519 161 0 99 0 2 162 2656 2816 Citrus concave gum-associated virus isolate Semnan-A10 segment RNA-1, complete sequence blastn 3702 298 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
16445111 16445111 PRJNA600413_P_NODE_54193_length_202_cov_2.653595_g53492_i0 PRJNA600413 54193 202 2.653595 5.3602619 Coguvirus 2560118 Viruses Viruses 374 3.3e-99   NTclustered gi|2758934013|gb|OR537855.1| 2024604 g53492 i0 100 22.4257425742574 202 0 100 0 1 202 4708 4507 Citrus concave gum-associated virus isolate Semnan-A10 segment RNA-1, complete sequence blastn 4530 374 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
20269027 20269027 PRJNA600413_P_NODE_72776_length_184_cov_2.266667_g72075_i0 PRJNA600413 72776 184 2.266667 4.17066728 Coguvirus 2560118 Viruses Viruses 340 2.99e-89   NTclustered gi|2125202293|gb|OK495690.1| 2024604 g72075 i0 100 21 184 0 100 0 1 184 5908 5725 Citrus concave gum-associated virus isolate CE-c3 segment RNA1, complete sequence blastn 3864 340 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
22250885 22250885 PRJNA600413_P_NODE_22578_length_299_cov_12.836000_g21877_i0 PRJNA600413 22578 299 12.836 38.37964 Rubodvirus prosserense 2734485 Viruses Viruses 388 1.87e-103   NTclustered gi|1381624487|gb|MF062135.1| 2164103 g21877 i0 90.667 40.7926421404682 300 16 99 5 2 299 1459 1170 Apple rubbery wood virus 2 isolate 355-1 segment Sa capsid protein (CP) gene, complete cds blastn 12197 388 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Rubodvirus Rubodvirus prosserense
22819279 22819279 PRJNA600413_P_NODE_21778_length_305_cov_1.914062_g21077_i0 PRJNA600413 21778 305 1.914062 5.8378891 Coguvirus 2560118 Viruses Viruses 564 2.95e-156   NTclustered gi|2125202293|gb|OK495690.1| 2024604 g21077 i0 100 21 305 0 100 0 1 305 6473 6169 Citrus concave gum-associated virus isolate CE-c3 segment RNA1, complete sequence blastn 6405 564 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
23526830 23526830 PRJNA600413_P_NODE_48739_length_211_cov_1.259259_g48038_i0 PRJNA600413 48739 211 1.259259 2.65703649 Rubodvirus prosserense 2734485 Viruses Viruses 385 1.61e-102   NTclustered gi|1381622473|gb|MF062128.1| 2164103 g48038 i0 99.526 14.9241706161137 211 1 100 0 1 211 5578 5368 Apple rubbery wood virus 2 isolate 982-11 segment L RNA-dependent RNA polymerase (RdRp) gene, complete cds blastn 3149 385 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Rubodvirus Rubodvirus prosserense
24094172 24094172 PRJNA600413_P_NODE_38379_length_232_cov_1.901639_g37678_i0 PRJNA600413 38379 232 1.901639 4.41180248 Coguvirus 2560118 Viruses Viruses 424 3.82e-114   NTclustered gi|2125202293|gb|OK495690.1| 2024604 g37678 i0 99.569 21 232 1 100 0 1 232 5943 6174 Citrus concave gum-associated virus isolate CE-c3 segment RNA1, complete sequence blastn 4872 424 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
25367995 25367995 PRJNA600413_P_NODE_10560_length_455_cov_1.963054_g9861_i0 PRJNA600413 10560 455 1.963054 8.9318957 Coguvirus 2560118 Viruses Viruses 819 0   NTclustered gi|2019278450|gb|MW334941.1| 2024604 g9861 i0 99.121 23 455 4 100 0 1 455 4746 4292 Citrus concave gum-associated virus isolate CCGAV/FT159 RNA-dependent RNA polymerase gene, complete cds blastn 10465 819 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
25368339 25368339 PRJNA600413_P_NODE_18360_length_334_cov_2.638596_g17659_i0 PRJNA600413 18360 334 2.638596 8.81291064 Coguvirus 2560118 Viruses Viruses 617 2.48e-172   NTclustered gi|2019278450|gb|MW334941.1| 2024604 g17659 i0 100 22 334 0 100 0 1 334 1901 1568 Citrus concave gum-associated virus isolate CCGAV/FT159 RNA-dependent RNA polymerase gene, complete cds blastn 7348 617 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Coguvirus Coguvirus citri
29114372 29114372 PRJNA600413_P_NODE_58808_length_196_cov_1.387755_g58107_i0 PRJNA600413 58808 196 1.387755 2.7199998 Chuvivirus 2842604 Viruses Viruses 83.2 1.07e-16   NR UVF58769.1 2842604 g58107 i0 60.9 2.93877551020408 64 25 98 0 194 3 288 351 UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus] diamond 576 83.6 0.995215311004785 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Chuvivirus
30427916 30427916 PRJNA600413_P_NODE_54673_length_202_cov_1.000000_g53972_i0 PRJNA600413 54673 202 1 2.02 Chuvivirus 2842604 Viruses Viruses 50.4 3.98e-5   NR WET19891.1 2842604 g53972 i0 52.5 0.594059405940594 40 19 59.4 0 200 81 458 497 WET19891.1 MAG: nucleoprotein [Sea turtle neural virus 1] diamond 120 50.4 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Chuvivirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;