RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA600413", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8227742 8227742 PRJNA600413_P_NODE_53887_length_203_cov_1.324675_g53186_i0 PRJNA600413 53887 203 1.324675 2.68909025 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 348 2.0100000000000006e-91   NTclustered gi|2651357788|gb|PP174303.1| 41631 g53186 i0 97.537 70.8177339901478 203 5 100 0 1 203 3797 3595 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14376 348 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
17719617 17719617 PRJNA600413_P_NODE_123934_length_164_cov_1.173913_g123233_i0 PRJNA600413 123934 164 1.173913 1.92521732 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 281 1.6000000000000001e-71   NTclustered gi|4730939|gb|AF060454.1| 88563 g123233 i0 97.561 96.469512195122 164 4 100 0 1 164 250 413 Platyophrya vorax small subunit ribosomal RNA gene, complete sequence blastn 15821 281 1 Eukaryota Sar   Ciliophora Colpodea Cyrtolophosidida Platyophryidae Platyophrya Platyophrya vorax
27900978 27900978 PRJNA600413_P_NODE_121205_length_165_cov_0.879310_g120504_i0 PRJNA600413 121205 165 0.87931 1.4508615 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 52.4 5.29e-6   NR TNV84078.1 5974 g120504 i0 76.7 0.545454545454545 30 7 54.5 0 141 52 668 697 TNV84078.1 hypothetical protein FGO68_gene3184 [Halteria grandinella] diamond 90 52.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
29271936 29271936 PRJNA600413_P_NODE_64609_length_190_cov_1.446809_g63908_i0 PRJNA600413 64609 190 1.446809 2.7489371 root 1 Root_unresolved Root_unresolved 60.5 9.58e-9   NR CDW79333.1 5949 g63908 i0 55.3 4.68947368421053 38 17 60 0 1 114 190 227 CDW79333.1 archaemetzincin-2 isoform x1 [Stylonychia lemnae] diamond 891 60.8 0.995065789473684 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30314887 30314887 PRJNA600413_P_NODE_144092_length_161_cov_2.366071_g143391_i0 PRJNA600413 144092 161 2.366071 3.80937431 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 58.9 2.37e-8   NR CAD8057213.1 5886 g143391 i0 86.7 6.70807453416149 30 4 55.9 0 1 90 1578 1607 CAD8057213.1 unnamed protein product, partial [Paramecium primaurelia] diamond 1080 58.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
30743420 30743420 PRJNA600413_P_NODE_156714_length_152_cov_2.368932_g156013_i0 PRJNA600413 156714 152 2.368932 3.60077664 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 55.1 4.73e-7   NR KRX05631.1 266149 g156013 i0 45.8 0.947368421052632 48 26 94.7 0 1 144 402 449 KRX05631.1 hypothetical protein PPERSA_09771 [Pseudocohnilembus persalinus] diamond 144 55.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;