RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA600413", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA600413 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3693368 3693368 PRJNA600413_P_NODE_148043_length_161_cov_0.910714_g147342_i0 PRJNA600413 148043 161 0.910714 1.46624954 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|1145256338|ref|XM_012905700.2| 5854 g147342 i0 96.774 0.770186335403727 31 1 19 0 2 32 2640 2670 Plasmodium reichenowi hypothetical protein partial mRNA blastn 124 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
4400937 4400937 PRJNA600413_P_NODE_137584_length_162_cov_1.743363_g136883_i0 PRJNA600413 137584 162 1.743363 2.82424806 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 58.4 2.9e-4   NTclustered gi|258597954|ref|XM_001348848.2| 36329 g136883 i0 92.5 0.592592592592593 40 3 25 0 1 40 9084 9123 Plasmodium falciparum 3D7 conserved Plasmodium membrane protein, unknown function (PF3D7_1474200), partial mRNA blastn 96 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
22819098 22819098 PRJNA600413_P_NODE_142458_length_162_cov_0.902655_g141757_i0 PRJNA600413 142458 162 0.902655 1.4623011 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.03e-8   NTclustered gi|820699808|tpe|LN714499.1| 432359 g141757 i0 92.157 6.08024691358025 51 4 31 0 1 51 5596965 5596915 TPA_asm: Toxoplasma gondii VEG, chromosome chrIX, complete genome blastn 985 73.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;