RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA600413", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA600413 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27680458 27680458 PRJNA600413_P_NODE_100304_length_168_cov_1.369748_g99603_i0 PRJNA600413 100304 168 1.369748 2.30117664 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 78.2 4.28e-15   NR MFN4173909.1 2052176 g99603 i0 67.3 0.982142857142857 55 18 98.2 0 165 1 330 384 MFN4173909.1 chaperonin GroEL [Parachlamydiaceae bacterium] diamond 165 78.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28058978 28058978 PRJNA600413_P_NODE_147645_length_161_cov_0.910714_g146944_i0 PRJNA600413 147645 161 0.910714 1.46624954 Waddliaceae bacterium 2026802 Bacteria Bacteria 48.5 3.39e-5   NR HEY4832858.1 2026802 g146944 i0 72.4 0.540372670807453 29 8 54 0 160 74 106 134 HEY4832858.1 hypothetical protein [Waddliaceae bacterium] diamond 87 48.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae   Waddliaceae bacterium
30459506 30459506 PRJNA600413_P_NODE_87673_length_175_cov_1.619048_g86972_i0 PRJNA600413 87673 175 1.619048 2.833334 Simkania sp. 34094 Bacteria Bacteria 46.2 8.96e-4   NR MBS3904683.1 34094 g86972 i0 51.1 0.771428571428571 45 22 77.1 0 175 41 293 337 MBS3904683.1 MFS transporter [Simkania sp.] diamond 135 46.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
31167148 31167148 PRJNA600413_P_NODE_111375_length_166_cov_0.871795_g110674_i0 PRJNA600413 111375 166 0.871795 1.4471797 Bacteria 2 Bacteria Bacteria 75.9 2.63e-14   NR MBI5274801.1 2047757 g110674 i0 63 1.95180722891566 54 20 97.6 0 164 3 380 433 MBI5274801.1 NTP/NDP exchange transporter [Chlamydiales bacterium] diamond 324 76.6 0.990861618798956 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31691785 31691785 PRJNA600413_P_NODE_154557_length_155_cov_2.839623_g153856_i0 PRJNA600413 154557 155 2.839623 4.40141565 Chlamydia psittaci 83554 Bacteria Bacteria 45.4 7.07e-5   NR EPJ32943.1 1112244 g153856 i0 84 0.483870967741935 25 4 48.4 0 112 38 13 37 EPJ32943.1 hypothetical protein CP061683_1554 [Chlamydia psittaci 06-1683] diamond 75 45.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
32166544 32166544 PRJNA600413_P_NODE_141118_length_162_cov_0.902655_g140417_i0 PRJNA600413 141118 162 0.902655 1.4623011 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 55.8 2.26e-8   NR MFV0341090.1 2052176 g140417 i0 78.8 0.611111111111111 33 7 61.1 0 1 99 63 95 MFV0341090.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 99 55.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;