RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA600413" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA600413 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3693293 3693293 PRJNA600413_P_NODE_136343_length_163_cov_0.859649_g135642_i0 PRJNA600413 136343 163 0.859649 1.40122787 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 106 2.86e-25   NR PRP87528.1 1890364 g135642 i0 98.1 7.95092024539877 54 1 99.4 0 163 2 9 62 PRP87528.1 Ras GTPase [Planoprotostelium fungivorum] diamond 1296 106 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
5677485 5677485 PRJNA600413_P_NODE_23525_length_293_cov_2.090164_g22824_i0 PRJNA600413 23525 293 2.090164 6.12418052 Didymium trachysporum 2058443 Evosea other_Eukaryota 436 6.419999999999999e-118   NTclustered gi|1304517520|gb|MG662513.1| 2058443 g22824 i0 93.814 97.1467576791809 291 17 99 1 3 293 186 475 Didymium trachysporum voucher MA81679 small subunit ribosomal RNA gene, partial sequence blastn 28464 436 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium trachysporum
12053113 12053113 PRJNA600413_P_NODE_28730_length_265_cov_1.250000_g28029_i0 PRJNA600413 28730 265 1.25 3.3125 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 250 8e-62   NTclustered gi|300078497|gb|GU001159.1| 200886 g28029 i0 83.774 4.73584905660377 265 41 100 1 1 265 2661 2923 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1255 250 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
17153071 17153071 PRJNA600413_P_NODE_96994_length_169_cov_4.308333_g96293_i0 PRJNA600413 96994 169 4.308333 7.28108277 Cavenderia fasciculata 261658 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|470272783|ref|XM_004363171.1| 261658 g96293 i0 100 0.171597633136095 29 0 17 0 139 167 621 593 Cavenderia fasciculata uncharacterized protein (DFA_03626), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20976151 20976151 PRJNA600413_P_NODE_25817_length_279_cov_1.773913_g25116_i0 PRJNA600413 25817 279 1.773913 4.94921727 Lamproderma album 1115704 Evosea other_Eukaryota 324 4.93e-84   NTclustered gi|358628234|gb|JQ031971.1| 1115704 g25116 i0 90.4 90.752688172043 250 19 89 5 32 279 2386 2632 Lamproderma album voucher MM37151 18S ribosomal RNA gene, partial sequence blastn 25320 324 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Lamproderma Lamproderma album
28438070 28438070 PRJNA600413_P_NODE_143206_length_162_cov_0.902655_g142505_i0 PRJNA600413 143206 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.4 4.38e-19   NR XP_004333134.1 1257118 g142505 i0 73.6 3.88888888888889 53 14 98.1 0 2 160 124 176 XP_004333134.1 RapGAP/RanGAP domain containing protein [Acanthamoeba castellanii str. Neff] diamond 630 87.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28595966 28595966 PRJNA600413_P_NODE_118887_length_165_cov_0.879310_g118186_i0 PRJNA600413 118887 165 0.87931 1.4508615 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 43.1 0.0095   NR KAH3731694.1 1580589 g118186 i0 39.6 0.963636363636364 53 31 96.4 1 5 163 788 839 KAH3731694.1 ricin-type beta-trefoil lectin protein [Pelomyxa schiedti] diamond 159 43.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28879857 28879857 PRJNA600413_P_NODE_112648_length_166_cov_0.871795_g111947_i0 PRJNA600413 112648 166 0.871795 1.4471797 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72.4 2.86e-13   NR PRP73538.1 1890364 g111947 i0 54.5 0.993975903614458 55 25 99.4 0 1 165 133 187 PRP73538.1 hypothetical protein PROFUN_02547 [Planoprotostelium fungivorum] diamond 165 72.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29132707 29132707 PRJNA600413_P_NODE_147309_length_161_cov_0.910714_g146608_i0 PRJNA600413 147309 161 0.910714 1.46624954 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 75.5 1.8e-15   NR PRP74141.1 1890364 g146608 i0 80.4 0.857142857142857 46 9 85.7 0 2 139 112 157 PRP74141.1 histone H2A [Planoprotostelium fungivorum] diamond 138 75.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29574374 29574374 PRJNA600413_P_NODE_50570_length_208_cov_1.283019_g49869_i0 PRJNA600413 50570 208 1.283019 2.66867952 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.7 7.84e-18   NR XP_004358245.1 1257118 g49869 i0 69.6 1.64423076923077 56 17 80.8 0 17 184 21 76 XP_004358245.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 342 86.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31248914 31248914 PRJNA600413_P_NODE_106295_length_167_cov_0.864407_g105594_i0 PRJNA600413 106295 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 1.32e-8   NR XP_004344020.1 1257118 g105594 i0 51.9 0.934131736526946 52 25 93.4 0 8 163 24 75 XP_004344020.1 START domain containing protein [Acanthamoeba castellanii str. Neff] diamond 156 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;