RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599208" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4969629 4969629 PRJNA599208_P_NODE_9464_length_225_cov_2.755319_g9268_i0 PRJNA599208 9464 225 2.755319 6.19946775 Rhodothermales 1853224 Bacteria Bacteria 272 1.4099999999999998e-68   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g9268 i0 91.457 252.231111111111 199 15 88 2 24 222 2905286 2905482 Rhodothermaceae bacterium RA chromosome, complete genome blastn 56752 272 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
10776554 10776554 PRJNA599208_P_NODE_4969_length_361_cov_2.228395_g4774_i0 PRJNA599208 4969 361 2.228395 8.04450595 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 442 1.7399999999999995e-119   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g4774 i0 88.92 159.14404432133 361 36 99 4 1 359 1307520 1307878 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 57451 442 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
13326095 13326095 PRJNA599208_P_NODE_10151_length_214_cov_1.378531_g9955_i0 PRJNA599208 10151 214 1.378531 2.95005634 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 263 8.000000000000002e-66   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g9955 i0 89.855 617.981308411215 207 17 96 4 1 205 3830449 3830245 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 132248 263 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;