RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599208" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1848074 1848074 PRJNA599208_P_NODE_9302_length_228_cov_2.507853_g9106_i0 PRJNA599208 9302 228 2.507853 5.71790484 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 383 6.35e-102   NTclustered gi|325194423|emb|FR825253.1| 890382 g9106 i0 96.93 63.1578947368421 228 7 100 0 1 228 720 493 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 14400 383 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6950555 6950555 PRJNA599208_P_NODE_7846_length_259_cov_2.351351_g7650_i0 PRJNA599208 7846 259 2.351351 6.08999909 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 407 4.37e-109   NTclustered gi|575498660|gb|KF853245.1| 65357 g7650 i0 95.669 98.027027027027 254 10 98 1 1 254 646 898 Albugo candida strain ACCS 18S ribosomal RNA gene, partial sequence blastn 25389 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
13326285 13326285 PRJNA599208_P_NODE_8671_length_240_cov_2.497537_g8475_i0 PRJNA599208 8671 240 2.497537 5.9940888 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 394 3.11e-105   NTclustered gi|325194684|emb|FR825494.1| 890382 g8475 i0 96.25 44.5458333333333 240 9 100 0 1 240 408 169 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 10691 394 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;