RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA599208" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599208 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1141448 1141448 PRJNA599208_P_NODE_3401_length_467_cov_3.918605_g3207_i0 PRJNA599208 3401 467 3.918605 18.29988535 Rhabditophanes 114889 Nematoda Nematoda 839 0   NTclustered gi|76560630|gb|DQ145655.1| 114890 g3207 i0 98.929 51.0963597430407 467 5 100 0 1 467 604 138 Rhabditophanes sp. KR3021 28S ribosomal RNA gene, partial sequence blastn 23862 846 0.991725768321513 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. KR3021
3692955 3692955 PRJNA599208_P_NODE_4303_length_400_cov_3.327824_g4109_i0 PRJNA599208 4303 400 3.327824 13.311296 Rhabditophanes 114889 Nematoda Nematoda 701 0   NTclustered gi|76560678|gb|DQ145703.1| 114890 g4109 i0 98.25 47.445 400 7 100 0 1 400 935 536 Rhabditophanes sp. KR3021 28S ribosomal RNA gene, partial sequence blastn 18978 701 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. KR3021
8225353 8225353 PRJNA599208_P_NODE_13387_length_175_cov_1.231884_g13191_i0 PRJNA599208 13387 175 1.231884 2.155797 Rhabditophanes sp. KR3021 114890 Nematoda Nematoda 228 2.2799999999999996e-55   NTclustered gi|76560630|gb|DQ145655.1| 114890 g13191 i0 100 42.2742857142857 123 0 70 0 1 123 123 1 Rhabditophanes sp. KR3021 28S ribosomal RNA gene, partial sequence blastn 7398 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. KR3021
15169704 15169704 PRJNA599208_P_NODE_4952_length_362_cov_3.532308_g4757_i0 PRJNA599208 4952 362 3.532308 12.78695496 Rhabditophanes 114889 Nematoda Nematoda 664 0   NTclustered gi|76560678|gb|DQ145703.1| 114890 g4757 i0 100 100.091160220994 359 0 99 0 4 362 1444 1086 Rhabditophanes sp. KR3021 28S ribosomal RNA gene, partial sequence blastn 36233 664 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. KR3021
15169735 15169735 PRJNA599208_P_NODE_7712_length_262_cov_3.582222_g7516_i0 PRJNA599208 7712 262 3.582222 9.38542164 Rhabditophanes 114889 Nematoda Nematoda 484 1.99e-132   NTclustered gi|76560630|gb|DQ145655.1| 114890 g7516 i0 100 61.5267175572519 262 0 100 0 1 262 900 639 Rhabditophanes sp. KR3021 28S ribosomal RNA gene, partial sequence blastn 16120 484 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. KR3021
17149896 17149896 PRJNA599208_P_NODE_5754_length_325_cov_2.937500_g5558_i0 PRJNA599208 5754 325 2.9375 9.546875 Rhabditophanes sp. AMS-2013 1352046 Nematoda Nematoda 547 3.199999999999999e-151   NTclustered gi|516323920|gb|JX674037.1| 1352046 g5558 i0 99.666 78.4276923076923 299 1 92 0 1 299 299 1 Rhabditophanes sp. AMS-2013 isolate 57H6_57H7 18S small subunit ribosomal RNA gene, partial sequence blastn 25489 547 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Alloionematidae Rhabditophanes Rhabditophanes sp. AMS-2013
20267891 20267891 PRJNA599208_P_NODE_13316_length_175_cov_2.789855_g13120_i0 PRJNA599208 13316 175 2.789855 4.88224625 Rhabditophanes 114889 Nematoda Nematoda 318 1.32e-82   NTclustered gi|4099000|gb|U81580.1|PNU81580 55747 g13120 i0 99.429 81.8285714285714 175 1 100 0 1 175 574 748 Panagrolaimoid nematode KR3021 18S small subunit ribosomal RNA gene, complete sequence blastn 14320 318 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida     panagrolaimoid nematode KR3021

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;