RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA599208" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599208 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1141425 1141425 PRJNA599208_P_NODE_16021_length_154_cov_3.076923_g15825_i0 PRJNA599208 16021 154 3.076923 4.73846142 Opisthokonta 33154 Fungi Fungi 252 1.16e-62   NTclustered gi|1430413173|gb|MH629421.1| 1150877 g15825 i0 96.129 101.038961038961 155 4 100 2 1 154 87 240 Uncultured Entrophospora clone 2DW-WLS2-15 small subunit ribosomal RNA gene, partial sequence blastn 15560 252 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Entrophosporales Entrophosporaceae   uncultured Entrophospora
16444300 16444300 PRJNA599208_P_NODE_7193_length_276_cov_12.029289_g6997_i0 PRJNA599208 7193 276 12.029289 33.20083764 Fungi 4751 Fungi Fungi 505 1.62e-138   NTclustered gi|658131632|emb|HF968958.1| 4874 g6997 i0 99.638 147.804347826087 276 1 100 0 1 276 1987 2262 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 40794 505 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;