RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA599208", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA599208 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1847937 1847937 PRJNA599208_P_NODE_14222_length_168_cov_1.022901_g14026_i0 PRJNA599208 14222 168 1.022901 1.71847368 uncultured Arcobacter sp. 165434 Bacteria Bacteria 215 1.7e-51   NTclustered gi|682122801|gb|KJ739652.1| 165434 g14026 i0 91.667 137.886904761905 156 11 93 2 2 157 177 24 Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence blastn 23165 215 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
17719295 17719295 PRJNA599208_P_NODE_15034_length_161_cov_1.798387_g14838_i0 PRJNA599208 15034 161 1.798387 2.89540307 Campylobacter 194 Bacteria Bacteria 298 1.56e-76   NTclustered gi|1938724023|gb|CP060707.1| 199 g14838 i0 100 241.484472049689 161 0 100 0 1 161 724296 724136 Campylobacter concisus strain P1CDO2 chromosome, complete genome blastn 38879 298 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
17719309 17719309 PRJNA599208_P_NODE_1894_length_673_cov_2.177673_g1731_i0 PRJNA599208 1894 673 2.177673 14.65573929 Campylobacter 194 Bacteria Bacteria 1114 0   NTclustered gi|1207769201|gb|MF351714.1| 199 g1731 i0 96.588 234.378900445765 674 19 100 4 1 673 1133 1803 Campylobacter concisus strain H3O1 23S ribosomal RNA gene, partial sequence blastn 157737 1114 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
20267980 20267980 PRJNA599208_P_NODE_7616_length_265_cov_1.973684_g7420_i0 PRJNA599208 7616 265 1.973684 5.2302626 Campylobacter 194 Bacteria Bacteria 490 4.3299999999999986e-134   NTclustered gi|1207769205|gb|MF351718.1| 199 g7420 i0 100 231.747169811321 265 0 100 0 1 265 2003 2267 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 61413 490 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
20267993 20267993 PRJNA599208_P_NODE_9616_length_223_cov_1.188172_g9420_i0 PRJNA599208 9616 223 1.188172 2.64962356 root 1 Root_unresolved Root_unresolved 368 1.73e-97   NTclustered gi|513129748|gb|KF030233.1| 202 g9420 i0 96.413 106 223 8 100 0 1 223 750 528 Campylobacter mucosalis strain OH3763 16S ribosomal RNA gene, partial sequence blastn 23638 368 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter mucosalis
24093387 24093387 PRJNA599208_P_NODE_13039_length_178_cov_1.539007_g12843_i0 PRJNA599208 13039 178 1.539007 2.73943246 Campylobacter 194 Bacteria Bacteria 309 8.09e-80   NTclustered gi|1483583505|emb|LT631429.1| 204 g12843 i0 97.79 180.522471910112 181 1 100 1 1 178 31311 31131 Campylobacter showae genome assembly, plasmid: V blastn 32133 309 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
29227487 29227487 PRJNA599208_P_NODE_16629_length_151_cov_1.324561_g16433_i0 PRJNA599208 16629 151 1.324561 2.00008711 Helicobacter pylori 210 Bacteria Bacteria 45.8 1.6e-4   NR GAA8686254.1 210 g16433 i0 92 0.993377483443709 50 4 99.3 0 150 1 9 58 GAA8686254.1 hypothetical protein Kyoto145A_1480 [Helicobacter pylori] diamond 150 45.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;