RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA599208", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA599208 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10776575 10776575 PRJNA599208_P_NODE_6449_length_298_cov_3.091954_g6253_i0 PRJNA599208 6449 298 3.091954 9.21402292 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 361 4.049999999999999e-95   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g6253 i0 88.746 397.691275167785 311 14 97 6 7 296 3446963 3446653 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 118512 361 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
18424150 18424150 PRJNA599208_P_NODE_13695_length_172_cov_1.429630_g13499_i0 PRJNA599208 13695 172 1.42963 2.4589636 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 279 6.08e-71   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g13499 i0 95.93 39.25 172 7 100 0 1 172 1292613 1292442 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 6751 279 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
18424250 18424250 PRJNA599208_P_NODE_6615_length_294_cov_1.377432_g6419_i0 PRJNA599208 6615 294 1.377432 4.04965008 Peredibacter starrii 28202 Bacteria Bacteria 477 3.8e-130   NTclustered gi|2631252187|gb|CP139487.1| 28202 g6419 i0 95.918 175.367346938776 294 12 100 0 1 294 512547 512254 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 51558 477 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
18992925 18992925 PRJNA599208_P_NODE_8555_length_243_cov_1.592233_g8359_i0 PRJNA599208 8555 243 1.592233 3.86912619 Peredibacter 263370 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2631252187|gb|CP139487.1| 28202 g8359 i0 100 209.880658436214 243 0 100 0 1 243 511474 511232 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 51001 449 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
20267906 20267906 PRJNA599208_P_NODE_15816_length_156_cov_1.084034_g15620_i0 PRJNA599208 15816 156 1.084034 1.69109304 Bacteriovorax 146784 Bacteria Bacteria 272 9.059999999999999e-69   NTclustered gi|1700689994|gb|CP030035.1| 960 g15620 i0 98.077 288.429487179487 156 3 100 0 1 156 1662163 1662008 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 44995 272 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;