RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA599208" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 10 ✖

bioproject 1

  • PRJNA599208 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
572202 572202 PRJNA599208_P_NODE_16201_length_153_cov_2.258621_g16005_i0 PRJNA599208 16201 153 2.258621 3.45569013 Ilyobacter tartaricus 167644 Bacteria Bacteria 185 1.18e-42   NTclustered gi|15029010|emb|AJ307977.1| 167644 g16005 i0 91.176 143.098039215686 136 12 89 0 1 136 1042 907 Ilyobacter tartaricus 23S rRNA gene, DSM 2382 T blastn 21894 185 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter tartaricus
4969610 4969610 PRJNA599208_P_NODE_6444_length_298_cov_3.869732_g6248_i0 PRJNA599208 6444 298 3.869732 11.53180136 Leptotrichia 32067 Bacteria Bacteria 551 2.239999999999999e-152   NTclustered gi|631253196|ref|NR_114394.1| 40542 g6248 i0 100 111.989932885906 298 0 100 0 1 298 786 489 Leptotrichia buccalis strain C-1013-b 16S ribosomal RNA, partial sequence blastn 33373 551 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
6245095 6245095 PRJNA599208_P_NODE_14985_length_161_cov_4.798387_g14789_i0 PRJNA599208 14985 161 4.798387 7.72540307 Fusobacterium 848 Bacteria Bacteria 298 1.56e-76   NTclustered gi|2446175567|gb|CP117964.1| 851 g14789 i0 100 491 161 0 100 0 1 161 2087554 2087394 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 79051 298 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
6950470 6950470 PRJNA599208_P_NODE_16146_length_154_cov_1.017094_g15950_i0 PRJNA599208 16146 154 1.017094 1.56632476 Leptotrichia wadei 157687 Bacteria Bacteria 283 4.12e-72   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g15950 i0 100 193.603896103896 153 0 99 0 1 153 1756660 1756508 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 29815 283 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
14601046 14601046 PRJNA599208_P_NODE_11272_length_197_cov_3.600000_g11076_i0 PRJNA599208 11272 197 3.6 7.092 uncultured Leptotrichia sp. 159271 Bacteria Bacteria 359 8.98e-95   NTclustered gi|253683908|gb|FJ976286.1| 159271 g11076 i0 99.492 104.005076142132 197 1 100 0 1 197 311 115 Uncultured Leptotrichia sp. clone 7BBB40 16S ribosomal RNA gene, partial sequence blastn 20489 359 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia uncultured Leptotrichia sp.
14601104 14601104 PRJNA599208_P_NODE_16452_length_152_cov_1.321739_g16256_i0 PRJNA599208 16452 152 1.321739 2.00904328 Leptotrichia hofstadii 157688 Bacteria Bacteria 265 1.47e-66   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g16256 i0 98.026 85.4934210526316 152 3 100 0 1 152 2256969 2257120 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 12995 265 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
19698659 19698659 PRJNA599208_P_NODE_10536_length_208_cov_1.725146_g10340_i0 PRJNA599208 10536 208 1.725146 3.58830368 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 357 3.4499999999999996e-94   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g10340 i0 97.596 211.211538461538 208 5 100 0 1 208 196700 196907 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 43932 357 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
21543385 21543385 PRJNA599208_P_NODE_3097_length_494_cov_47.413567_g2906_i0 PRJNA599208 3097 494 47.413567 234.22302098 Fusobacterium 848 Bacteria Bacteria 813 0   NTclustered gi|15028908|emb|AJ307974.1| 851 g2906 i0 96.371 458.763157894737 496 15 100 2 1 494 507 13 Fusobacterium nucleatum 23S rRNA gene, strain DSM 20482 blastn 226629 813 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22818622 22818622 PRJNA599208_P_NODE_15158_length_160_cov_2.081301_g14962_i0 PRJNA599208 15158 160 2.081301 3.3300816 Fusobacterium 848 Bacteria Bacteria 291 2.5799999999999998e-74   NTclustered gi|2706074160|gb|CP077112.1| 76857 g14962 i0 99.375 482.90625 160 1 100 0 1 160 1980023 1979864 Fusobacterium polymorphum strain KCOM1272 chromosome, complete genome blastn 77265 291 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
24093401 24093401 PRJNA599208_P_NODE_15539_length_157_cov_5.658333_g15343_i0 PRJNA599208 15539 157 5.658333 8.88358281 Leptotrichia 32067 Bacteria Bacteria 283 4.22e-72   NTclustered gi|470484715|ref|NR_076664.1| 40542 g15343 i0 99.363 502.955414012739 157 0 100 1 1 157 1042 1197 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 78964 283 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;