RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA599208", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Annelida · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA599208 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6245161 6245161 PRJNA599208_P_NODE_6805_length_288_cov_2.625498_g6609_i0 PRJNA599208 6805 288 2.625498 7.56143424 Lumbricidae 6392 Annelida Annelida 532 7.8e-147   NTclustered gi|11494215|gb|AF212166.1|AF212166 6396 g6609 i0 100 132.270833333333 288 0 100 0 1 288 2095 1808 Eisenia fetida 28S ribosomal RNA gene, partial sequence blastn 38094 532 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Eisenia Eisenia fetida
18992836 18992836 PRJNA599208_P_NODE_14895_length_162_cov_1.904000_g14699_i0 PRJNA599208 14895 162 1.904 3.08448 Clitellata 42113 Annelida Annelida 300 4.36e-77   NTclustered gi|2703725018|gb|PP534975.1| 35632 g14699 i0 100 100 162 0 100 0 1 162 214 53 Lumbricus rubellus isolate E62 small subunit ribosomal RNA gene, partial sequence blastn 16200 300 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Lumbricus Lumbricus rubellus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;