RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599208", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14601041 14601041 PRJNA599208_P_NODE_11052_length_201_cov_1.164634_g10856_i0 PRJNA599208 11052 201 1.164634 2.34091434 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 224 3.5e-54   NTclustered gi|2874253789|emb|OY969773.1| 412054 g10856 i0 86.829 124.925373134328 205 21 100 6 1 201 420971 420769 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 25110 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17719294 17719294 PRJNA599208_P_NODE_14894_length_162_cov_1.912000_g14698_i0 PRJNA599208 14894 162 1.912 3.09744 Gemmatimonadaceae 219687 Bacteria Bacteria 207 2.72e-49   NTclustered gi|470475286|ref|NR_076270.1| 173480 g14698 i0 96.774 199.456790123457 124 4 77 0 1 124 1622 1745 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 32312 209 0.990430622009569 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
23524645 23524645 PRJNA599208_P_NODE_4999_length_359_cov_2.385093_g4804_i0 PRJNA599208 4999 359 2.385093 8.56248387 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 425 1.74e-114   NTclustered gi|2874253789|emb|OY969773.1| 412054 g4804 i0 88.636 106.022284122563 352 36 97 4 6 355 421102 421451 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 38062 425 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;