RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA599208", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA599208 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
572198 572198 PRJNA599208_P_NODE_15861_length_155_cov_3.025424_g15665_i0 PRJNA599208 15861 155 3.025424 4.6894072 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 287 3.21e-73   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g15665 i0 100 67.2 155 0 100 0 1 155 2344 2498 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 10416 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
5675906 5675906 PRJNA599208_P_NODE_12865_length_180_cov_1.062937_g12669_i0 PRJNA599208 12865 180 1.062937 1.9132866 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 276 8.320000000000001e-70   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g12669 i0 94.444 2.98888888888889 180 9 99 1 1 179 3731 3910 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 538 276 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
8225437 8225437 PRJNA599208_P_NODE_4707_length_374_cov_5.050445_g4512_i0 PRJNA599208 4707 374 5.050445 18.8886643 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 562 1.33e-155   NTclustered gi|2618963742|gb|OR769034.1| 5762 g4512 i0 94.766 29.628342245989305 363 15 96 3 1 359 2520 2882 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 11081 562 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11344874 11344874 PRJNA599208_P_NODE_9269_length_229_cov_1.265625_g9073_i0 PRJNA599208 9269 229 1.265625 2.89828125 Naegleria 5761 Heterolobosea other_Eukaryota 412 8.13e-111   NTclustered gi|32966202|gb|AY266314.1| 5762 g9073 i0 99.127 99.9606986899563 229 2 100 0 1 229 487 259 Naegleria gruberi 18S ribosomal RNA gene, partial sequence blastn 22891 412 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15875046 15875046 PRJNA599208_P_NODE_6973_length_283_cov_2.638211_g6777_i0 PRJNA599208 6973 283 2.638211 7.46613713 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 348 2.97e-91   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g6777 i0 88.811 3.03886925795053 286 29 100 3 1 283 561 846 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 860 348 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;