RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599208", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9500664 9500664 PRJNA599208_P_NODE_15288_length_159_cov_2.237705_g15092_i0 PRJNA599208 15288 159 2.237705 3.55795095 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 274 2.58e-69   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g15092 i0 98.701 76.5849056603774 154 2 97 0 5 158 799981 799828 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 12177 274 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
10776494 10776494 PRJNA599208_P_NODE_14689_length_164_cov_1.362205_g14493_i0 PRJNA599208 14689 164 1.362205 2.2340162 Candidatus Saccharibacteria bacterium oral taxon 488 713059 Bacteria Bacteria 235 1.27e-57   NTclustered gi|1842054184|gb|CP039999.1| 713059 g14493 i0 92.683 58.0182926829268 164 11 99 1 2 164 143994 143831 Candidatus Saccharibacteria bacterium oral taxon 488 strain CM001 chromosome, complete genome blastn 9515 235 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
14601043 14601043 PRJNA599208_P_NODE_11132_length_199_cov_2.858025_g10936_i0 PRJNA599208 11132 199 2.858025 5.68746975 Candidatus Saccharibacteria bacterium RAAC3_TM7_1 1394711 Bacteria Bacteria 311 2.58e-80   NTclustered gi|563353835|gb|CP006915.1| 1394711 g10936 i0 95 65.8341708542714 200 6 100 3 1 199 452925 452729 Candidatus Saccharibacteria bacterium RAAC3_TM7_1, complete genome blastn 13101 311 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium RAAC3_TM7_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;