RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599208", tax_clade = "Amoebozoa" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA599208 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4399859 4399859 PRJNA599208_P_NODE_13044_length_178_cov_1.397163_g12848_i0 PRJNA599208 13044 178 1.397163 2.48695014 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 329 6.21e-86   NTclustered gi|300078496|gb|GU001158.1| 5778 g12848 i0 100 3 178 0 100 0 1 178 2696 2519 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 534 329 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4969545 4969545 PRJNA599208_P_NODE_12824_length_180_cov_1.636364_g12628_i0 PRJNA599208 12824 180 1.636364 2.9454552 Ripella 1217112 Discosea other_Eukaryota 296 6.39e-76   NTclustered gi|1269228348|gb|MF683473.1| 2047821 g12628 i0 96.216 101.388888888889 185 0 100 6 1 180 260 78 Ripella platypodia clone 21702 18S ribosomal RNA gene, partial sequence blastn 18250 296 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
20974490 20974490 PRJNA599208_P_NODE_14437_length_166_cov_1.558140_g14241_i0 PRJNA599208 14437 166 1.55814 2.5865124 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 268 1.27e-67   NTclustered gi|330902861|gb|JF298256.1| 1017091 g14241 i0 95.783 11.210843373494 166 7 100 0 1 166 219 54 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 1861 268 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;