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contig_metadata

22 rows where bioproject = "PRJNA599026" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA599026 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5675778 5675778 PRJNA599026_S_NODE_66325_length_162_cov_0.902655_g65869_i0 PRJNA599026 66325 162 0.902655 1.4623011 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 57.8 2.29e-9   NR CAA9322868.1 246130 g65869 i0 83.9 0.574074074074074 31 5 57.4 0 3 95 44 74 CAA9322868.1 MAG: Nitrile hydratase beta subunit, partial [uncultured Gemmatimonadaceae bacterium] diamond 93 57.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
5675783 5675783 PRJNA599026_S_NODE_66685_length_162_cov_0.902655_g66229_i0 PRJNA599026 66685 162 0.902655 1.4623011 uncultured Gemmatimonadetes bacterium Rifle_16ft_4_minimus_37772 1665097 Bacteria Bacteria 115 1.7e-21   NTclustered gi|874575674|gb|KT007003.1| 1665097 g66229 i0 80.255 0.969135802469136 157 27 96 4 3 157 25041 24887 Uncultured Gemmatimonadetes bacterium Rifle_16ft_4_minimus_37772 genomic sequence blastn 157 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadetes bacterium Rifle_16ft_4_minimus_37772
5675819 5675819 PRJNA599026_S_NODE_70085_length_161_cov_0.910714_g69629_i0 PRJNA599026 70085 161 0.910714 1.46624954 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 66.6 4.56e-11   NR HJR42308.1 2026741 g69629 i0 70 1.86335403726708 50 15 93.2 0 5 154 426 475 HJR42308.1 TonB-dependent receptor [Gemmatimonadaceae bacterium] diamond 300 66.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
13326036 13326036 PRJNA599026_S_NODE_71071_length_161_cov_0.910714_g70615_i0 PRJNA599026 71071 161 0.910714 1.46624954 Gemmatirosa sp. 2510638 Bacteria Bacteria 91.7 6.01e-20   NR HZF67384.1 2510638 g70615 i0 83 0.987577639751553 53 9 98.8 0 159 1 171 223 HZF67384.1 NAD(P)/FAD-dependent oxidoreductase [Gemmatirosa sp.] diamond 159 91.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
15874589 15874589 PRJNA599026_S_NODE_52653_length_167_cov_0.864407_g52197_i0 PRJNA599026 52653 167 0.864407 1.44355969 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 189 1.0199999999999999e-43   NTclustered gi|2874253728|emb|OY969570.1| 412054 g52197 i0 87.273 68.4910179640719 165 21 99 0 3 167 1479964 1480128 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 11438 189 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26604813 26604813 PRJNA599026_S_NODE_50881_length_167_cov_0.864407_g50425_i0 PRJNA599026 50881 167 0.864407 1.44355969 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 85.5 2.94e-19   NR HEX4937017.1 2026741 g50425 i0 86.4 1.58083832335329 44 6 79 0 36 167 33 76 HEX4937017.1 ACT domain-containing protein [Gemmatimonadaceae bacterium] diamond 264 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26763363 26763363 PRJNA599026_S_NODE_53441_length_166_cov_1.213675_g52985_i0 PRJNA599026 53441 166 1.213675 2.0147005 Gemmatirosa sp. 2510638 Bacteria Bacteria 82.8 9.65e-17   NR MBV9880088.1 2510638 g52985 i0 71.2 1.89759036144578 52 15 94 0 158 3 140 191 MBV9880088.1 hypothetical protein [Gemmatirosa sp.] diamond 315 82.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
27237864 27237864 PRJNA599026_S_NODE_66563_length_162_cov_0.902655_g66107_i0 PRJNA599026 66563 162 0.902655 1.4623011 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 84.3 3.18e-18   NR MBT3326408.1 2448054 g66107 i0 69.8 2.94444444444444 53 16 98.1 0 160 2 170 222 MBT3326408.1 hypothetical protein [Gemmatimonadales bacterium] diamond 477 84.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27332928 27332928 PRJNA599026_S_NODE_71863_length_161_cov_0.910714_g71407_i0 PRJNA599026 71863 161 0.910714 1.46624954 Roseisolibacter sp. H3M3-2 3031323 Bacteria Bacteria 99.8 1.71e-24   NR WP_275836585.1 3031323 g71407 i0 90.6 0.987577639751553 53 5 98.8 0 2 160 73 125 WP_275836585.1 PH domain-containing protein [Roseisolibacter sp. H3M3-2] diamond 159 99.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter sp. H3M3-2
27585410 27585410 PRJNA599026_S_NODE_64864_length_163_cov_0.894737_g64408_i0 PRJNA599026 64864 163 0.894737 1.45842131 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 47 4.03e-4   NR NUQ11404.1 2026741 g64408 i0 63 0.496932515337423 27 10 49.7 0 162 82 352 378 NUQ11404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Gemmatimonadaceae bacterium] diamond 81 47 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27617092 27617092 PRJNA599026_S_NODE_41764_length_179_cov_1.176923_g41308_i0 PRJNA599026 41764 179 1.176923 2.10669217 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.00334   NR PYO74039.1 2026742 g41308 i0 42.6 3.03351955307263 61 33 98.9 1 179 3 442 502 PYO74039.1 MAG: hypothetical protein DMD64_05305, partial [Gemmatimonadota bacterium] diamond 543 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27837824 27837824 PRJNA599026_S_NODE_70064_length_161_cov_0.910714_g69608_i0 PRJNA599026 70064 161 0.910714 1.46624954 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 97.4 5.66e-23   NR HEV7992185.1 2026741 g69608 i0 81.1 5.88819875776398 53 10 98.8 0 1 159 215 267 HEV7992185.1 murein L,D-transpeptidase catalytic domain family protein [Gemmatimonadaceae bacterium] diamond 948 97.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28627583 28627583 PRJNA599026_S_NODE_55387_length_166_cov_0.871795_g54931_i0 PRJNA599026 55387 166 0.871795 1.4471797 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 58.9 2.48e-8   NR WP_025414805.1 861299 g54931 i0 52 0.903614457831325 50 24 90.4 0 15 164 684 733 WP_025414805.1 DUF4011 domain-containing protein [Gemmatirosa kalamazoonensis] diamond 150 58.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
29953546 29953546 PRJNA599026_S_NODE_56491_length_165_cov_1.198276_g56035_i0 PRJNA599026 56491 165 1.198276 1.9771554 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 68.2 1.37e-11   NR HEY0970875.1 2448054 g56035 i0 61.1 0.981818181818182 54 21 98.2 0 3 164 27 80 HEY0970875.1 exodeoxyribonuclease V subunit gamma [Gemmatimonadales bacterium] diamond 162 68.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29985132 29985132 PRJNA599026_S_NODE_64811_length_163_cov_0.894737_g64355_i0 PRJNA599026 64811 163 0.894737 1.45842131 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 52.8 1.74e-6   NR HKG91596.1 2026741 g64355 i0 52.3 0.809815950920245 44 21 81 0 132 1 9 52 HKG91596.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 132 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30206013 30206013 PRJNA599026_S_NODE_70632_length_161_cov_0.910714_g70176_i0 PRJNA599026 70632 161 0.910714 1.46624954 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 68.9 2.45e-12   NR MBA3889328.1 2026741 g70176 i0 71.2 0.968944099378882 52 15 96.9 0 157 2 134 185 MBA3889328.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 156 68.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30333147 30333147 PRJNA599026_S_NODE_63112_length_163_cov_0.894737_g62656_i0 PRJNA599026 63112 163 0.894737 1.45842131 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 53.1 2.58e-6   NR HWG34296.1 2026741 g62656 i0 56.6 0.975460122699387 53 22 95.7 1 161 6 228 280 HWG34296.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 159 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30364661 30364661 PRJNA599026_S_NODE_56632_length_165_cov_0.879310_g56176_i0 PRJNA599026 56632 165 0.87931 1.4508615 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.1 0.00182   NR HEY2855356.1 2026741 g56176 i0 46.3 1.49090909090909 41 21 74.5 1 42 164 66 105 HEY2855356.1 lysophospholipid acyltransferase family protein [Gemmatimonadaceae bacterium] diamond 246 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31153758 31153758 PRJNA599026_S_NODE_57415_length_165_cov_0.879310_g56959_i0 PRJNA599026 57415 165 0.87931 1.4508615 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.1 4.88e-6   NR MFL5521582.1 2448054 g56959 i0 74.2 1.12727272727273 31 8 56.4 0 1 93 68 98 MFL5521582.1 hypothetical protein [Gemmatimonadales bacterium] diamond 186 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31248902 31248902 PRJNA599026_S_NODE_64695_length_163_cov_0.894737_g64239_i0 PRJNA599026 64695 163 0.894737 1.45842131 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 82 1.03e-16   NR MBA3890469.1 2026741 g64239 i0 82.7 0.957055214723926 52 9 95.7 0 6 161 287 338 MBA3890469.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 156 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32229807 32229807 PRJNA599026_S_NODE_61598_length_164_cov_0.886957_g61142_i0 PRJNA599026 61598 164 0.886957 1.45460948 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 58.9 2.47e-8   NR NUQ21020.1 2026741 g61142 i0 64.4 0.823170731707317 45 16 82.3 0 28 162 271 315 NUQ21020.1 PAS domain S-box protein [Gemmatimonadaceae bacterium] diamond 135 58.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32640327 32640327 PRJNA599026_S_NODE_61460_length_164_cov_0.886957_g61004_i0 PRJNA599026 61460 164 0.886957 1.45460948 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 48.9 8.48e-5   NR MBA2459053.1 2448054 g61004 i0 49 2.8719512195122 51 25 93.3 1 6 158 310 359 MBA2459053.1 ABC transporter ATP-binding protein [Gemmatimonadales bacterium] diamond 471 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;