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contig_metadata

10 rows where bioproject = "PRJNA599026", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA599026 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
571953 571953 PRJNA599026_S_NODE_61061_length_164_cov_0.886957_g60605_i0 PRJNA599026 61061 164 0.886957 1.45460948 Pseudodesulfovibrio indicus 1716143 Bacteria Bacteria 56.5 0.001   NTclustered gi|998152336|gb|CP014206.1| 1716143 g60605 i0 89.362 0.463414634146341 47 1 29 3 19 65 3366568 3366526 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome blastn 76 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus
8793920 8793920 PRJNA599026_S_NODE_14007_length_267_cov_8.669725_g13551_i0 PRJNA599026 14007 267 8.669725 23.14816575 Pseudomonadati 3379134 Bacteria Bacteria 89 2.75e-18   NR WP_051305862.1 160661 g13551 i0 60 3.68539325842697 65 26 73 0 197 3 633 697 WP_051305862.1 aconitate hydratase AcnA [Desulfogranum mediterraneum] diamond 984 89 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfogranum Desulfogranum mediterraneum
10069785 10069785 PRJNA599026_S_NODE_31488_length_198_cov_1.369128_g31032_i0 PRJNA599026 31488 198 1.369128 2.71087344 root 1 Root_unresolved Root_unresolved 178 2.71e-40   NTclustered gi|85720936|gb|CP000252.1| 56780 g31032 i0 85.799 156.272727272727 169 23 85 1 30 198 742330 742497 Syntrophus aciditrophicus SB, complete genome blastn 30942 178 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus aciditrophicus
13325883 13325883 PRJNA599026_S_NODE_59351_length_164_cov_1.547826_g58895_i0 PRJNA599026 59351 164 1.547826 2.53843464 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 63.9 6.33e-6   NTclustered gi|2621717585|emb|OY775937.1| 240139 g58895 i0 87.273 4.70731707317073 55 7 34 0 1 55 1216100 1216046 MAG: uncultured Desulfobacter sp. isolate 6579293f-26f5-4e71-a9db-d48b61c722da genome assembly, chromosome: 1 blastn 772 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.
27156051 27156051 PRJNA599026_S_NODE_47202_length_171_cov_1.614754_g46746_i0 PRJNA599026 47202 171 1.614754 2.76122934 Pseudomonadati 3379134 Bacteria Bacteria 58.2 6.84e-9   NR MCG8472201.1 2044940 g46746 i0 45.5 3.80701754385965 55 29 96.5 1 167 3 18 71 MCG8472201.1 6-carboxytetrahydropterin synthase QueD [Desulfobacterales bacterium] diamond 651 58.5 0.994871794871795 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
28229914 28229914 PRJNA599026_S_NODE_54326_length_166_cov_0.871795_g53870_i0 PRJNA599026 54326 166 0.871795 1.4471797 root 1 Root_unresolved Root_unresolved 63.2 3.07e-10   NR PLY02973.1 892 g53870 i0 60 24.5421686746988 55 22 99.4 0 166 2 111 165 PLY02973.1 MAG: guanylate kinase [Desulfuromonas sp.] diamond 4074 63.5 0.995275590551181 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
29100998 29100998 PRJNA599026_S_NODE_30228_length_201_cov_1.006579_g29772_i0 PRJNA599026 30228 201 1.006579 2.02322379 Syntrophobacteraceae bacterium 2052185 Bacteria Bacteria 63.2 1.23e-9   NR MEM5787735.1 2052185 g29772 i0 51.7 0.895522388059702 60 29 89.6 0 199 20 274 333 MEM5787735.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Syntrophobacteraceae bacterium] diamond 180 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae   Syntrophobacteraceae bacterium
29903764 29903764 PRJNA599026_S_NODE_34311_length_192_cov_1.426573_g33855_i0 PRJNA599026 34311 192 1.426573 2.73902016 Bacteria 2 Bacteria Bacteria 42 0.0338   NR MCP4022144.1 2049433 g33855 i0 42.1 1.359375 38 22 59.4 0 77 190 14 51 MCP4022144.1 alpha/beta hydrolase [Desulfobacteraceae bacterium] diamond 261 42.4 0.990566037735849 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
31533848 31533848 PRJNA599026_S_NODE_70836_length_161_cov_0.910714_g70380_i0 PRJNA599026 70836 161 0.910714 1.46624954 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 101 7.27e-25   NR MCL4243683.1 2080303 g70380 i0 96.2 0.987577639751553 53 2 98.8 0 161 3 31 83 MCL4243683.1 metal-dependent transcriptional regulator [Candidatus Dadabacteria bacterium] diamond 159 101 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
32039810 32039810 PRJNA599026_S_NODE_67098_length_162_cov_0.902655_g66642_i0 PRJNA599026 67098 162 0.902655 1.4623011 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 47 1.34e-4   NR MDY6880885.1 2202153 g66642 i0 72.4 0.537037037037037 29 8 53.7 0 1 87 104 132 MDY6880885.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 87 47 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;