RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599026", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29858645 29858645 PRJNA599026_S_NODE_14411_length_264_cov_2.832558_g13955_i0 PRJNA599026 14411 264 2.832558 7.47795312 Thermoplasmata archaeon 1906666 Archaea Archaea 53.5 5.82e-6   NR UCH88848.1 1906666 g13955 i0 39.7 0.829545454545455 73 44 83 0 247 29 4 76 UCH88848.1 MAG: enoyl-CoA hydratase/isomerase family protein [Thermoplasmata archaeon] diamond 219 53.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30206011 30206011 PRJNA599026_S_NODE_69272_length_161_cov_1.366071_g68816_i0 PRJNA599026 69272 161 1.366071 2.19937431 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 41.2 0.043   NR MDD1765735.1 1906667 g68816 i0 50 0.782608695652174 42 21 78.3 0 6 131 65 106 MDD1765735.1 DUF4147 domain-containing protein [Methanomassiliicoccales archaeon] diamond 126 41.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
32166479 32166479 PRJNA599026_S_NODE_16378_length_251_cov_2.415842_g15922_i0 PRJNA599026 16378 251 2.415842 6.06376342 Thermoplasmatota archaeon 2806419 Archaea Archaea 48.5 7.8e-5   NR MDI6855267.1 2806419 g15922 i0 47.4 2.11553784860558 38 20 45.4 0 125 238 45 82 MDI6855267.1 40S ribosomal protein S19 [Thermoplasmatota archaeon] diamond 531 48.5 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;