RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA599026", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA599026 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17149623 17149623 PRJNA599026_S_NODE_62734_length_163_cov_1.342105_g62278_i0 PRJNA599026 62734 163 1.342105 2.18763115 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 134 4.72e-27   NTclustered gi|238617605|gb|FJ973380.1| 45107 g62278 i0 81.595 1.80368098159509 163 28 99 2 1 162 1256 1417 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 294 134 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
19698088 19698088 PRJNA599026_S_NODE_30276_length_201_cov_1.000000_g29820_i0 PRJNA599026 30276 201 1 2.01 uncultured Allapsidae 1937813 SAR_Eukaryotes SAR_Eukaryotes 344 2.5799999999999998e-90   NTclustered gi|1139419006|gb|KY553703.1| 1937813 g29820 i0 97.525 96.6318407960199 202 4 100 1 1 201 308 107 Uncultured Allapsidae isolate OTU411 small subunit ribosomal RNA gene, partial sequence blastn 19423 344 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae   uncultured Allapsidae
29922071 29922071 PRJNA599026_S_NODE_69031_length_161_cov_1.875000_g68575_i0 PRJNA599026 69031 161 1.875 3.01875 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.00167   NR MES1909079.1 1215613 g68575 i0 41.2 0.950310559006211 51 30 95 0 6 158 6 56 MES1909079.1 hypothetical protein [Cercozoa sp. M6MM] diamond 153 43.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30079712 30079712 PRJNA599026_S_NODE_63152_length_163_cov_0.894737_g62696_i0 PRJNA599026 63152 163 0.894737 1.45842131 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 54.3 1.05e-6   NR MES1909155.1 1215613 g62696 i0 53.7 0.993865030674847 54 25 99.4 0 162 1 127 180 MES1909155.1 hypothetical protein [Cercozoa sp. M6MM] diamond 162 54.3 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;