RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599026", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA599026 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13325948 13325948 PRJNA599026_S_NODE_63471_length_163_cov_0.894737_g63015_i0 PRJNA599026 63471 163 0.894737 1.45842131 Rhodothermales bacterium 2306054 Bacteria Bacteria 87.4 3.19e-19   NR MBE2185464.1 2306054 g63015 i0 74.1 0.993865030674847 54 14 99.4 0 162 1 54 107 MBE2185464.1 alpha/beta fold hydrolase [Rhodothermales bacterium] diamond 162 87.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
29448007 29448007 PRJNA599026_S_NODE_51290_length_167_cov_0.864407_g50834_i0 PRJNA599026 51290 167 0.864407 1.44355969 Rubrivirga sp. SAORIC476 1961794 Bacteria Bacteria 58.5 3.53e-8   NR WP_095514388.1 1961794 g50834 i0 50.9 0.988023952095808 55 27 98.8 0 165 1 269 323 WP_095514388.1 DUF2723 domain-containing protein [Rubrivirga sp. SAORIC476] diamond 165 58.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. SAORIC476
30490688 30490688 PRJNA599026_S_NODE_50673_length_167_cov_1.016949_g50217_i0 PRJNA599026 50673 167 1.016949 1.69830483 Rhodothermales bacterium 2306054 Bacteria Bacteria 108 2.45e-26   NR MBE2186404.1 2306054 g50217 i0 92.7 0.988023952095808 55 4 98.8 0 2 166 22 76 MBE2186404.1 4-hydroxyphenylpyruvate dioxygenase [Rhodothermales bacterium] diamond 165 108 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;