RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA599026", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA599026 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6950379 6950379 PRJNA599026_S_NODE_75346_length_151_cov_2.088235_g74890_i0 PRJNA599026 75346 151 2.088235 3.15323485 Thecamoeba quadrilineata 343530 Discosea other_Eukaryota 73.1 9.46e-9   NTclustered gi|2386968834|ref|NC_068853.1| 343530 g74890 i0 82.927 0.927152317880795 82 12 54 2 58 138 48650 48730 Thecamoeba quadrilineata mitochondrion, complete genome blastn 140 73.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba quadrilineata
27837801 27837801 PRJNA599026_S_NODE_3324_length_521_cov_3.711864_g2877_i0 PRJNA599026 3324 521 3.711864 19.33881144 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 137 2.7799999999999997e-37   NR XP_004333244.1 1257118 g2877 i0 42.7 0.904030710172745 157 86 90.4 1 521 51 16 168 XP_004333244.1 MAPEG family protein [Acanthamoeba castellanii str. Neff] diamond 471 137 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29479499 29479499 PRJNA599026_S_NODE_18010_length_242_cov_1.512953_g17554_i0 PRJNA599026 18010 242 1.512953 3.66134626 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.2 1.84e-10   NR XP_004339486.1 1257118 g17554 i0 45.6 2.00826446280992 79 42 97.9 1 2 238 73 150 XP_004339486.1 Nacylsphingosine amidohydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 486 66.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;