RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA597223" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5673360 5673360 PRJNA597223_P_NODE_84045_length_153_cov_2.830508_g82199_i0 PRJNA597223 84045 153 2.830508 4.33067724 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 187 3.2899999999999992e-43   NTclustered gi|2874253728|emb|OY969570.1| 412054 g82199 i0 89.262 35.281045751634 149 16 97 0 5 153 173667 173519 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 5398 187 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6947324 6947324 PRJNA597223_P_NODE_41046_length_222_cov_4.229947_g39200_i0 PRJNA597223 41046 222 4.229947 9.39048234 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 298 2.29e-76   NTclustered gi|575456455|gb|CP007128.1| 861299 g39200 i0 90.991 42.1396396396396 222 18 99 2 1 221 3042839 3043059 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 9355 298 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
20971346 20971346 PRJNA597223_P_NODE_40537_length_224_cov_2.671958_g38691_i0 PRJNA597223 40537 224 2.671958 5.98518592 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 292 1.08e-74   NTclustered gi|2874253978|emb|OY970303.1| 412054 g38691 i0 89.916 136.040178571429 238 8 99 4 1 222 1903937 1903700 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 30473 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24795748 24795748 PRJNA597223_P_NODE_8980_length_581_cov_3.164835_g7405_i0 PRJNA597223 8980 581 3.164835 18.38769135 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 809 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g7405 i0 91.91 47.6746987951807 581 44 99 3 2 581 3043261 3043839 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 27699 809 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
29713789 29713789 PRJNA597223_P_NODE_87930_length_150_cov_2.973913_g86084_i0 PRJNA597223 87930 150 2.973913 4.4608695 Gemmatirosa 1706036 Bacteria Bacteria 47.4 2.49e-4   NR HEY0779105.1 2510638 g86084 i0 84 2 25 4 50 0 75 1 274 298 HEY0779105.1 Fe-S cluster assembly protein SufD [Gemmatirosa sp.] diamond 300 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
29890465 29890465 PRJNA597223_P_NODE_80011_length_158_cov_0.943089_g78165_i0 PRJNA597223 80011 158 0.943089 1.49008062 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 82.8 7.18e-19   NR HWP38410.1 2448054 g78165 i0 87.5 0.759493670886076 40 5 75.9 0 120 1 1 40 HWP38410.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Gemmatimonadales bacterium] diamond 120 82.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31881360 31881360 PRJNA597223_P_NODE_29557_length_278_cov_3.168724_g27711_i0 PRJNA597223 29557 278 3.168724 8.80905272 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 81.3 4.07e-18   NR HVD33131.1 2448054 g27711 i0 81.8 0.474820143884892 44 8 47.5 0 173 42 11 54 HVD33131.1 hypothetical protein [Gemmatimonadales bacterium] diamond 132 81.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32860919 32860919 PRJNA597223_P_NODE_74720_length_164_cov_1.689922_g72874_i0 PRJNA597223 74720 164 1.689922 2.77147208 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.4 0.00142   NR HUF12398.1 2910168 g72874 i0 43.6 0.713414634146341 39 22 71.3 0 47 163 322 360 HUF12398.1 hypothetical protein [Longimicrobiales bacterium] diamond 117 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;