RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA597223" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA597223 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12048387 12048387 PRJNA597223_P_NODE_52510_length_192_cov_2.095541_g50664_i0 PRJNA597223 52510 192 2.095541 4.02343872 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 124 3.45e-24   NTclustered gi|2037918137|ref|XM_041606106.1| 7654 g50664 i0 92.045 38.96875 88 7 46 0 1 88 129 42 PREDICTED: Lytechinus variegatus histone H3, embryonic (LOC121413318), mRNA blastn 7482 124 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
22817824 22817824 PRJNA597223_P_NODE_16698_length_405_cov_9.600000_g14890_i0 PRJNA597223 16698 405 9.6 38.88 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.011   NTclustered gi|1834271362|ref|XM_033781777.1| 7604 g14890 i0 96.97 1.81481481481481 33 0 8 1 370 402 3698 3667 PREDICTED: Asterias rubens multidrug resistance-associated protein 5-like (LOC117298494), mRNA blastn 735 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27048275 27048275 PRJNA597223_P_NODE_5822_length_721_cov_25.120991_g4501_i0 PRJNA597223 5822 721 25.120991 181.12234511 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 95.5 1.98e-18   NR XP_041463828.1 7654 g4501 i0 32.8 2.8377253814147 204 120 82.4 6 11 604 279 471 XP_041463828.1 uncharacterized protein LOC121414838 [Lytechinus variegatus] diamond 2046 95.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
29051291 29051291 PRJNA597223_P_NODE_51688_length_194_cov_1.383648_g49842_i0 PRJNA597223 51688 194 1.383648 2.68427712 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.2 1.48e-7   NR KAJ8029544.1 206669 g49842 i0 46 1.93298969072165 63 34 97.4 0 193 5 33 95 KAJ8029544.1 COMM domain-containing protein 10 [Holothuria leucospilota] diamond 375 56.6 0.992932862190813 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
29447979 29447979 PRJNA597223_P_NODE_41150_length_222_cov_2.374332_g39304_i0 PRJNA597223 41150 222 2.374332 5.27101704 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 46.2 1.64e-4   NR KAJ8033627.1 206669 g39304 i0 54.1 0.5 37 14 50 1 205 95 20 53 KAJ8033627.1 hypothetical protein HOLleu_23936 [Holothuria leucospilota] diamond 111 46.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
32039760 32039760 PRJNA597223_P_NODE_46938_length_205_cov_1.294118_g45092_i0 PRJNA597223 46938 205 1.294118 2.6529419 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 105 1.98e-25   NR XP_041453906.1 7654 g45092 i0 73.1 5.88292682926829 67 18 98 0 203 3 232 298 XP_041453906.1 ADP/ATP translocase 3-like [Lytechinus variegatus] diamond 1206 105 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;